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Submitted SNP(ss) Details: ss23143936           
Submitter
HandlePARC
Submitter SNP IDPPARG-010161
RefSNP(rs#)rs1373641
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize42
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143936|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGCTTAGCAT TTATTCGTGA GATTAATCAC ACTATTGAAT GTAATTGTAC TTCATTCTCA
 TTACTGTATA GTGTTTCATT GTATAAATAT ATCACAACAT ATTTATCCTA CTGTTGATGG
 GCATTCAGAT GGTTTTCAGT ATTGCAAATA GTACTGCTAT GAACATTGTC CTGTAGGTCT
 CTTAGTGAAG GAGCGTATGC ATTTCTGGTA GCTATATGCT TCAGCCAATA ATAGAGTATG
 TTGAGCTTCA GGAGA
 Y
 GTTGCCAACA GTTCTGAACA GGACTCTAGA AATCTATACT TCTACTAGAA GTGCATGAGT
 GTTCTAGCTC TTCTACACCA TCACTGGTAC TTGGCATTCT CTGTCTTTTT CACGTTAGCC
 ATTCTGGTGG GTGTGTTGGT ATCATATTCT AATTTTAATC TCCCCTTTTC TGATGTCTAA
 AAAGTTAAAC ACTTTAAAAA GCGTTTGTTG TCCATTTGGC TATCCTTTCT TGTAAAGTAC
 CTGTTCAAGT CTTTC

  Submitted Frequency for ss23143936 back to top
There is no frequency submission for ss23143936.


  dbSNP summary of Genotypes for ss23143936 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4242T=0.73809522
C=0.26190478C/T=0.52380955
T/T=0.47619048
Pr(chiSq=1.204,df=1)
=0.273		Genotype
Freq.
PARC-EUROPEAN-PANEL4040T=0.64999998
C=0.34999999C/T=0.50000000
T/T=0.40000001
C/C=0.10000000
Pr(chiSq=0.196,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss23143936 back to top
There is no individual genotype data for ss23143936.

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