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Submitted SNP(ss) Details: ss23143938           
Submitter
HandlePARC
Submitter SNP IDPPARG-010269
RefSNP(rs#)rs4135308
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143938|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TACTGTTGAT GGGCATTCAG ATGGTTTTCA GTATTGCAAA TAGTACTGCT ATGAACATTG
 TCCTGTAGGT CTCTTAGTGA AGGAGCGTAT GCATTTCTGG TAGCTATATG CTTCAGCCAA
 TAATAGAGTA TGTTGAGCTT CAGGAGATGT TGCCAACAGT TCTGAACAGG ACTCTAGAAA
 TCTATACTTC TACTAGAAGT GCATGAGTGT TCTAGCTCTT CTACACCATC ACTGGTACTT
 GGCATTCTCT GTCTT
 Y
 TTCACGTTAG CCATTCTGGT GGGTGTGTTG GTATCATATT CTAATTTTAA TCTCCCCTTT
 TCTGATGTCT AAAAAGTTAA ACACTTTAAA AAGCGTTTGT TGTCCATTTG GCTATCCTTT
 CTTGTAAAGT ACCTGTTCAA GTCTTTCACC CATTTTTATA TTGAGTACTT TAGGTAAACG
 TTCTAAAGCA TACCTTGTCA GATACATGTA TTGTAAATAT CTCCTCTTAC TCTGTGTGCT
 TTTTCGTTTA CTTAA

  Submitted Frequency for ss23143938 back to top
There is no frequency submission for ss23143938.


  dbSNP summary of Genotypes for ss23143938 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4646T=0.97826087
C=0.02173913T/T=0.95652175
C/T=0.04347826
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23143938 back to top
There is no individual genotype data for ss23143938.

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