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Submitted SNP(ss) Details: ss23143939           
Submitter
HandlePARC
Submitter SNP IDPPARG-012671
RefSNP(rs#)rs397687728
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize46
PopulationPARC-AFRICAN-PANEL
Allele
Observed Allele-/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143939|allelePos=256|len=511|taxid=9606|alleles='-/T'|mol=Genomic
 GAAAGATTAA AAGTATGAAA AGTGTCTACT ATGTATACTT TAATATCATA TTGTAATACA
 TTTGAAGATA CTATATGGTA TAACTAATGA AAATCTTCAA ATCAGCTCAT AACCACTAGA
 GATCTGGCTG TATCTGTTTT GACACTTTTG TTCTCAGTAT CTGTTTAGCT TAAGACCCTT
 GTCTTCTCAT TAAGAGTGCT TGACACAGTA AGTTGAAAAC ATAATTTCAA AAGAGCATAG
 AGTGTCACAT GGTTT
 N
 GCCAGACTAA ACAACTCTGA GTAAGAAAGT GGCTTTCCCC CTATGGTAAT GCCAAGCTAC
 TAGAGGACCT TCAGTGGTAA AGTATGATTT AAAACCCTGA CCCCATCTGT CTTTTCCCAT
 TTGCAGTAAG TCCTTTATAG TGTTTGAAGG TGGGCACAGC AGGGAAACAG TACTCTGGCA
 GATCTGCGGT GGCTCCCTCC TTTCTGAGTC ATTACACACT CTTCTGGATC ATTCCTTTCA
 TTTTTCCTTT TCCTC

  Submitted Frequency for ss23143939 back to top
There is no frequency submission for ss23143939.


  dbSNP summary of Genotypes for ss23143939 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4646T=0.78260869
-=0.21739130T/T=0.56521738
-/T=0.43478259
Pr(chiSq=0.688,df=1)
=0.439		Genotype
Freq.
PARC-EUROPEAN-PANEL4040T=0.69999999
-=0.30000001T/T=0.50000000
-/T=0.40000001
-/-=0.10000000
Pr(chiSq=0.045,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23143939 back to top
There is no individual genotype data for ss23143939.

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