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Submitted SNP(ss) Details: ss23143942           
Submitter
HandlePARC
Submitter SNP IDPPARG-014111
RefSNP(rs#)rs4135310
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143942|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TCCACATCCT CATCAGCATT TGGTGGTGTT AGTGTTTTAG ATTTTAGCCA TTCTATTTGT
 AGTGGTATCT TCTTGTTTTA GTTTGCAGTG CTCTCGTGAC ATATGATGTT GAAGATCTTT
 TCACATGTTC ACATGCCATC TATATATCTT CTTGGATGAA GTGTCTATTC AGATATTTTG
 CTCATTTTTA AAACAGGGTT ATTCACTTTC TTATTATTGA GTTTTAAGCG TTCTTTGTAT
 ATTTTGGATA ACAGT
 Y
 CTTTATCACA GTAGTCCCTG ACCTTTTTGG CACCAGGGAC CAGTTTCATG GAAGACAGTT
 TTTCCATGGA CTGGGGTGGG CAGGAATGGT TTCAGGTGAA ACTGGTCCAC CTCAGATCAT
 CAGGTATTAG ATTCTCATAC GGAGTGTGCA ACCTAGATCC CTTGCGTGCA CAGTTCACAA
 TAGGGTTTGT GGTCCTATGA GAATCTAATG CAGCCACTGA TCTGACAGGA GGTGGAGCTC
 AGGCTATAAT GCTTG

  Submitted Frequency for ss23143942 back to top
There is no frequency submission for ss23143942.


  dbSNP summary of Genotypes for ss23143942 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848C=0.97916669
T=0.02083333C/C=0.95833331
C/T=0.04166667
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23143942 back to top
There is no individual genotype data for ss23143942.

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