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Submitted SNP(ss) Details: ss23143946           
Submitter
HandlePARC
Submitter SNP IDPPARG-016191
RefSNP(rs#)rs4135313
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize42
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143946|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 AATTCTTTTC ATACGTTATC GGATTCAATT TGCTGATATT TTGTTAAAGA TTTCTGCATG
 TCTGTCCATG AGAGATTGGT CTATAGGGTT TATTTTCCTT GTAATGTCTG TTTTGTTTTA
 GTATTAGGGT AATTCTAGCC TCATTGAATG AGTTAGGAAG TATTCCCTCT GCTTTTATAT
 TCTGAAAGAG ATTTCAGAGA ATTGGTATAA TTTCTTCCTT AAATGTTTGG TAGAATTCAC
 CAGTGAACCC AGTCC
 R
 GTGCCTTCTG TTTCAGAAGG TTATTAGTTA TTGATTCAAT TTCATTAATA AATGTAGGCC
 TATTCCATTT CTCTATTTCA TCTTGTATGA GTTTTGGAAA ATTATGTCTT TCAAGGAATG
 AGTTCATTTC ACCTAGATTA TCAAATTTGT GAGCATAGAG CCTATTATCC TTTAATGTCA
 ATGAGATCTG TAATGATACC CCTCTTTCAT TTCTGAATAA CTTTCATTCA TTCTTCACGT
 ACTAGACAAA GTAGA

  Submitted Frequency for ss23143946 back to top
There is no frequency submission for ss23143946.


  dbSNP summary of Genotypes for ss23143946 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4242G=0.97619045
A=0.02380952G/G=0.95238096
A/G=0.04761905
Pr(chiSq=0.001,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss23143946 back to top
There is no individual genotype data for ss23143946.

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