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Submitted SNP(ss) Details: ss23143950           
Submitter
HandlePARC
Submitter SNP IDPPARG-016622
RefSNP(rs#)rs4135317
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143950|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 TGTCAATGAG ATCTGTAATG ATACCCCTCT TTCATTTCTG AATAACTTTC ATTCATTCTT
 CACGTACTAG ACAAAGTAGA ATTTCAACTA AACCAAAGCA ACTGTTCAAC AGATTTAGCC
 TTAGTCCTAA TCAGATTATT AGTAATATCT CCCTTTAGAA ATATATGAAG GTACTTTTAG
 CAGAGGAACC AAGCTTGAGC TAGTTTGACC ATAATGAATT TTTGCTGAGG AAGCAGAAGA
 AATGTTTATA TTGGT
 K
 AGGGCATAAT CCTGTAATCT TTTCTGTGTC CTGATACCTC AGGACCAGCG TAAGCAAACT
 CCCTAGACAA GATGTGGCTC ATGCAAGAGG AAATATGCTT TTGAAAATGA ACATGGGCCA
 AGCATAGTGA CTCATGCCTG TAATCCCAAC ACTTTGGGAG GCTGAGGCGG GAGGATTGCT
 TGAGTCCGGG AGTTTGAGAA TAGCCTGGGC AACATAATGA TACCTTGCCT CTACAAAAAA
 AAAAATAAAA ATAAA

  Submitted Frequency for ss23143950 back to top
There is no frequency submission for ss23143950.


  dbSNP summary of Genotypes for ss23143950 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848G=0.89583331
T=0.10416666G/G=0.79166669
G/T=0.20833333
Pr(chiSq=0.064,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23143950 back to top
There is no individual genotype data for ss23143950.

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