NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss23143952           
Submitter
HandlePARC
Submitter SNP IDPPARG-023726
RefSNP(rs#)rs4135318
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143952|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 TCAAAACCCA TAGAACTTGG CTGGGCATGG TGGCTCACAC CTGTAATCCC AGCACTTTGG
 GAGGCAGAGG CAGGTAGATC CATTGAGGTC AGGAGTTCAA GACCAGCCTG GCCAACATAG
 TGAAACCCCT TCTCTACTAA AAATACAAAA ATTAGCAGGG CATGGTGGCA CACGCCTGTA
 ATCCCAGCTA CTCAGGAGGC TGGGGCAGGA GAATCATATG AACCTGGGAG GTGGAGGTTG
 CAGTGAGCCA AGATC
 R
 TGCCACTGCA TTCCAGCCTG GGTGACAGAG CGAGACTCCA CCAAAAACAA AAACAAAACA
 AAACAAAAAT GTAGAACTAT GCAACAGAAA GAGCAAACCT TGATGTAAAT CATGGACTTT
 AGGTGGTAAT AATGTGTCAA TATTGGTTCA TCAGTTATAG CAGGTATACT ACACTGTGCA
 AGGTGTTAGT AATAGGGGAA AACCATGCTT TGTAGAGAGG GGACAGGAGG CTGGGGAAGG
 GCTATTTTAA GAGCT

  Submitted Frequency for ss23143952 back to top
There is no frequency submission for ss23143952.


  dbSNP summary of Genotypes for ss23143952 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848G=0.62500000
A=0.37500000A/G=0.50000000
G/G=0.37500000
A/A=0.12500000
Pr(chiSq=0.107,df=1)
=0.752		Genotype
Freq.

  Submitted individual genotype for ss23143952 back to top
There is no individual genotype data for ss23143952.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement