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Submitted SNP(ss) Details: ss23143953           
Submitter
HandlePARC
Submitter SNP IDPPARG-023742
RefSNP(rs#)rs4135319
Submitted Batch IDPPARG-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleG/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23143953|allelePos=256|len=511|taxid=9606|alleles='G/T'|mol=Genomic
 TTGGCTGGGC ATGGTGGCTC ACACCTGTAA TCCCAGCACT TTGGGAGGCA GAGGCAGGTA
 GATCCATTGA GGTCAGGAGT TCAAGACCAG CCTGGCCAAC ATAGTGAAAC CCCTTCTCTA
 CTAAAAATAC AAAAATTAGC AGGGCATGGT GGCACACGCC TGTAATCCCA GCTACTCAGG
 AGGCTGGGGC AGGAGAATCA TATGAACCTG GGAGGTGGAG GTTGCAGTGA GCCAAGATCG
 TGCCACTGCA TTCCA
 K
 CCTGGGTGAC AGAGCGAGAC TCCACCAAAA ACAAAAACAA AACAAAACAA AAATGTAGAA
 CTATGCAACA GAAAGAGCAA ACCTTGATGT AAATCATGGA CTTTAGGTGG TAATAATGTG
 TCAATATTGG TTCATCAGTT ATAGCAGGTA TACTACACTG TGCAAGGTGT TAGTAATAGG
 GGAAAACCAT GCTTTGTAGA GAGGGGACAG GAGGCTGGGG AAGGGCTATT TTAAGAGCTC
 TGTACTTTCT GCTCA

  Submitted Frequency for ss23143953 back to top
There is no frequency submission for ss23143953.


  dbSNP summary of Genotypes for ss23143953 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848G=0.89583331
T=0.10416666G/G=0.79166669
G/T=0.20833333
Pr(chiSq=0.064,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23143953 back to top
There is no individual genotype data for ss23143953.

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