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Submitted SNP(ss) Details: ss23144394           
Submitter
HandlePARC
Submitter SNP IDLDLR-000689
RefSNP(rs#)rs17242732
Submitted Batch IDLDLR-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize44
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23144394|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 GATTGCTAAT TACTTCTTTT TTTTTTTTTT TTTTTGAGAC GGAGTCTCAC TCTGTCGCCC
 AGGCTGGAGT ACAGTGGCGC AATCTCGTCT CACTGCAAAC TCCACCTCCC GGGTTCACGC
 CATTCTCCTG CCTCAGCCTC CCGAGTAGCT GGGACTACAG GCACCCGCCA CCACGCCCGG
 CTAATTTTTT GTATTTTTTT TTAGTAGAGG TGGGGTTTCA CTGTGTTATC CAGGATGGTC
 TTGATCTCCT GACCT
 Y
 GTGATCCACC TGCCTCAGCC TCCCAAAGTG CTGGGATTAC AGGCGTGAGC CACCATGCCC
 AGCCCGCTAA TTATTTCAAT TTGACCTTGA CACTGAGCCT GCCAAGTAGG TTCAAGCATT
 TTGATGGCCC CTTTACAGGT TGGGAAAGCT AATTTATCTG TCCAAGGCCG AATTCTGAAA
 CTGAGTCTTA ACTGCCAAAA ATTCTTATCA TCAATTTCTT CTTCTGGGTT GGGCACAGTG
 GCTCATGCCT GTAAA

  Submitted Frequency for ss23144394 back to top
There is no frequency submission for ss23144394.


  dbSNP summary of Genotypes for ss23144394 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4444C=0.97727275
T=0.02272727C/C=0.95454544
C/T=0.04545455
Pr(chiSq=0.001,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23144394 back to top
There is no individual genotype data for ss23144394.

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