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Submitted SNP(ss) Details: ss23144402           
Submitter
HandlePARC
Submitter SNP IDLDLR-002507
RefSNP(rs#)rs17242759
Submitted Batch IDLDLR-AFRICAN-051304
Submitted DateMay 17, 2004
Publication Cited[1] Pharmacogenetics and Risk of Cardiovascular Disease
First entry to dbSNPMay 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize48
PopulationPARC-AFRICAN-PANEL
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss23144402|allelePos=256|len=511|taxid=9606|alleles='A/C'|mol=Genomic
 AAGACATTTG AAAATCACCC CACTGCAAAC TCCTCCCCCT GCTAGAAACC TCACATTGAA
 ATGCTGTAAA TGACGTGGGC CCCGAGTGCA ATCGCGGGAA GCCAGGGTTT CCAGCTAGGA
 CACAGCAGGT CGTGATCCGG GTCGGGACAC TGCCTGGCAG AGGCTGCGAG CATGGGGCCC
 TGGGGCTGGA AATTGCGCTG GACCGTCGCC TTGCTCCTCG CCGCGGCGGG GACTGCAGGT
 AAGGCTTGCT CCAGG
 M
 GCCAGAATAG GTTGAGAGGG AGCCCCCGGG GGGCCCTTGG GAATTTATTT TTTTGGGTAC
 AAATAATCAC TCCATCCCTG GGAGACTTGT GGGGTAATGG CACGGGGTCC TTCCCAAACG
 GCTGGAGGGG GCGCTGGAGG GGGGCGCTGA GGGGAGCGCG AGGGTCGGGA GGAGTCTGAG
 GGATTTAAGG GAAACGGGGC ACCGCTGTCC CCCAAGTCTC CACAGGGTGA GGGACCGCAT
 CTTCTTTGAG ACGGA

  Submitted Frequency for ss23144402 back to top
There is no frequency submission for ss23144402.


  dbSNP summary of Genotypes for ss23144402 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PARC-AFRICAN-PANEL4848C=0.97916669
A=0.02083333C/C=0.95833331
A/C=0.04166667
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss23144402 back to top
There is no individual genotype data for ss23144402.

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