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Submitted SNP(ss) Details: ss28447646           
Submitter
HandleEGP_SNPS
Submitter SNP IDORC2L-007395
RefSNP(rs#)rs16836210
Submitted Batch IDORC2L-PDR90-061504
Submitted DateJul 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28447646|allelePos=256|len=511|taxid=9606|alleles='C/T'|mol=Genomic
 TGGTGGTTGA TATGAATTCT TCATCACTTT TGAGTAACTT ACTGTTTTTG TTTAGGTTGG
 CAACAATGAG TAAACCAGAA TTAAAGGAAG ACAAGATGCT GGAGGTTCAC TTTGTGGGAG
 ATGATGATGT TCTTAATCAC ATTCTAGATA GAGAAGGAGG TATTAAGTGA TTGTACAATT
 TGAAGAGATG CTTATTATAA TGTTTATGGA TTATTTCACT TTTAAAACTT TTAACATTTT
 CTTTTGAAAA TATAG
 Y
 GCAAAGGATT GATCTGGTTA GTAAAACTAA ATAAAAACTG CTTTAATTTT TAGTTTAATT
 CTTTCAAACT TTAATTGAAA ATGTTCAGTA AAGCCTAATA TAAAACAAAA TGCCCAGGAG
 TGGTAGTCAC TAATAACTAC CCATTGTAAT TTAAAATATG TGGTTATTTT GAACCCTAAA
 AATATATACT TTCAAGATTG TGTGTGTTTT TTTTTTTAAC TATATAAACT GTGGAAGAGT
 GGTCAGAGTG GTCAG

  Submitted Frequency for ss28447646 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176C=0.99431801
T=0.00568200
0.011 +/-0.016ORC2L-PDR90-061504EGP_SNPS


  dbSNP summary of Genotypes for ss28447646 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176C=0.99431819
T=0.00568182C/C=0.98863637
C/T=0.01136364
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss28447646 back to top
There is no individual genotype data for ss28447646.

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