Submitted SNP(ss) Details: ss32478416

Submitted SNP(ss) Details: ss32478416

Submitter
Handle	EGP_SNPS
Submitter SNP ID	CCNB2-002628
RefSNP(rs#)	rs16953412
Submitted Batch ID	CCNB2-PDR90-010505
Submitted Date	Jan 05, 2005
Publication Cited	[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNP	Jan 5 2005 12:00:00:000AM

Resource Links
GenBank Accession	AY864066
Submitted Gene Name	CCNB2
Submitted Gene ID	9133
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	154
Population	PDR90

Allele
Observed Allele	G/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 1
Genotype Summary	population count: 15
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CCTAACCCCT CCCTGCCCCG GGGTGGGAGA AGTGTAGGAA AGCGCTTCCG AGATGGCGCC
 TGTCAAGTGA GCCCCCAGAG CACTAGGCCT AGTACTCAGC GAGCGATCCC CGAGTGCTCT
 TCATTGCTAG AGAGTTATCT ACTTCCACGT TCCTGGGATT TCCCTCCCCC TTTCTTACAA
 CTCCTTGCCA ACTAAGGGAC CTGTGATGGC GGCTGGGAGG AGGACTGGAA GGGTTCTGTA
 GGCAGTAAAG TGTAC
 K
 GCGTGTTTCA TCAGGCAACT GCCAGGCTGT TTTTCAGATT GTTCACATTT CTTTTTGTAT
 GAGTTTCCCA TTTATTTCGG CACGCTAAGT CTTCCATGCT ACGTTCACTA ATAAATGGGT
 TTGTCCCCTT AAAAAATTAA TTTCTTTACT CAAATGTAAC AGAGGTTTTT GAATATAATT
 TGGACCAATG TGGCAGACTG AGAGAAAAGG GTCCAAATTC ATTTATTTCA TCCTTGCAGA
 GATCAAAGTG TTATG

Submitted Frequency for ss32478416

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Genotype Freq.	Submitted Hetero- zygosity	Submission Batch	Submitter
PDR90	154	G=0.95454502	T=0.04545500				CCNB2-PDR90-010505	EGP_SNPS

dbSNP summary of Genotypes for ss32478416

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
PDR90	154	154	G=0.95454544	T=0.04545455	G/G=0.90909094 G/T=0.09090909	Pr(chiSq=0.016,df=1) =1.000	Genotype Freq.
HapMap-CEU	226	226	G=0.99557525	T=0.00442478	G/G=0.99115044 G/T=0.00884956	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HapMap-HCB - EAST ASIA	86	86	G=0.97674417	T=0.02325581	G/G=0.97674417 T/T=0.02325581	Pr(chiSq=41.047,df=1) =0.001	Genotype Freq.
HapMap-JPT	172	172	G=0.94767439	T=0.05232558	G/G=0.89534885 G/T=0.10465116	Pr(chiSq=0.027,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	226	G=0.83628321	T=0.16371681	G/G=0.69026548 G/T=0.29203540 T/T=0.01769911	Pr(chiSq=0.500,df=1) =0.527	Genotype Freq.
HAPMAP-ASW	98	98	G=0.90816325	T=0.09183674	G/G=0.81632656 G/T=0.18367347	Pr(chiSq=0.088,df=1) =1.000	Genotype Freq.
HAPMAP-CHB	82	82	G=0.96341461	T=0.03658536	G/G=0.92682928 G/T=0.07317073	Pr(chiSq=0.004,df=1) =1.000	Genotype Freq.
HAPMAP-CHD	170	170	G=0.97647059	T=0.02352941	G/G=0.95294118 G/T=0.04705882	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	G=0.99431819	T=0.00568182	G/G=0.98863637 G/T=0.01136364	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-LWK	180	180	G=0.88888890	T=0.11111111	G/G=0.77777779 G/T=0.22222222	Pr(chiSq=0.295,df=1) =0.655	Genotype Freq.
HAPMAP-MEX	100	100	G=0.99000001	T=0.01000000	G/G=0.98000002 G/T=0.02000000	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-MKK	286	286	G=0.84965032	T=0.15034965	G/G=0.73426574 G/T=0.23076923 T/T=0.03496503	Pr(chiSq=1.339,df=1) =0.251	Genotype Freq.
HAPMAP-TSI	176	176	G=0.98863637	T=0.01136364	G/G=0.97727275 G/T=0.02272727	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss32478416

There is no individual genotype data for ss32478416.

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