Submitted SNP(ss) Details: ss37042908

Submitted SNP(ss) Details: ss37042908

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP16-000236
RefSNP(rs#)	rs28907869
Submitted Batch ID	MMP16-EGP_YORUB-041105
Submitted Date	Apr 12, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Apr 12 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ003082
Submitted Gene Name	MMP16
Submitted Gene ID	4325
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 AGGAGAAGCA CATTTACTGG CATTAGCCCC CAAACAGATG CTTGCCTCGC TCCCTTCCCC
 CTTCCTCTTT CAGCCAAACC ATCACTTGCC AAGGGCTGGT GGTTGCTGCC CCCCCTGTCC
 ACTGCCTCGC ACTGCTACAG CTCCAGTCCT TTCTGGCAGC CTCCTCTGAA GTTCCCTGCC
 CGCGTTCGCC CGTGCTTCTT GCCAGCCGCC TCCCCCTCTT GCCTGCAGCT CTCCT
 R
 GCTCCCGCCA GCCTCTCCCC CGCTCGGTCT GCGAGCAGCC TCTTCCTCCC GCCCTTGCCA
 GCTGCTTTAC TCGCCTTTCC TCAGGCTGCT TCTTCTCCTT CTTTCCCCAA CCCTTCCCCT
 GGCTCCCGCA GCCGGTTTCT TTCCAGCGCC CCCATCCCTC TCATCGGATG TTTTGTTAAC
 ACCCAGGACC ATCTCTCCCG GGTCCCACTG TGCGCGTGTG TCCACCGTTC ACTTGGAAAG
 TGAGCGTTTT CATCC

Submitted Frequency for ss37042908

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_AD-PANEL	30	A=1.00000000	G=0.00000000	MMP16-EGP_AD-041105	EGP_SNPS
EGP_HISP-PANEL	42	A=1.00000000	G=0.00000000	MMP16-EGP_HISP-041105	EGP_SNPS
EGP_CEPH-PANEL	44	A=1.00000000	G=0.00000000	MMP16-EGP_CEPH-041105	EGP_SNPS
EGP_ASIAN-PANEL	48	A=1.00000000	G=0.00000000	MMP16-EGP_ASIAN-041105	EGP_SNPS
EGP_YORUB-PANEL	24	A=0.95833302	G=0.04166700	MMP16-EGP_YORUB-041105	EGP_SNPS

dbSNP summary of Genotypes for ss37042908

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	A=0.95833331	G=0.04166667	A/A=0.91666669 A/G=0.08333334	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss37042908

There is no individual genotype data for ss37042908.

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