Submitted SNP(ss) Details: ss37042921

Submitted SNP(ss) Details: ss37042921

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP16-002815
RefSNP(rs#)	rs28907878
Submitted Batch ID	MMP16-EGP_YORUB-041105
Submitted Date	Apr 12, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Apr 12 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ003082
Submitted Gene Name	MMP16
Submitted Gene ID	4325
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	24
Population	EGP_YORUB-PANEL

Allele
Observed Allele	-/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	DIV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TTAGACTGTC ATTTGCTTTA CTTTGATAGC TTTGGGAACA GACGGCACAA AGCAAAAGGG
 AACTTAAGGA TAGGGACTTG TCAGACCTCT GCCAAAGTAC TCTTCCTGTC ATCAAGTCAG
 CACTGAAGCC AGTAATGTGC AATAAATCAA TGAAAGCGTG TATACACCTG GGCTGTAACA
 CAACTTTATC ACATATACGG TGGGATACAA AGCCAGTAAG AGGGTCTTAG TAACATTTAC
 TTCTTTTGAT TAGAT
 N
 TGATGTCCTC TGAACTCTCA AACGAATTAT GAATAATTTT TTAAGGAATA ATGTGATTTT
 TTTTCTTATA TTGTTGATAT TATGAAGCTT ATTGTCATTT TGCTGGGAGT GTGTGTTTAC
 ACAATAGCAA GACCTGTTGC ACAGTATTTG AACATGCTTC ATGTAACCAA TTGATACACA
 GAGTGTGCAT AATAAATGCC ATGTGTAAAG GCATATTCTG AATATAACTG TGTTTATAGA
 AACTGTTCTT AGGAC

Submitted Frequency for ss37042921

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_AD-PANEL	28	C=1.00000000	-=0.00000000	MMP16-EGP_AD-041105	EGP_SNPS
EGP_YORUB-PANEL	24	C=0.87500000	-=0.12500000	MMP16-EGP_YORUB-041105	EGP_SNPS
EGP_ASIAN-PANEL	46	C=1.00000000	-=0.00000000	MMP16-EGP_ASIAN-041105	EGP_SNPS
EGP_CEPH-PANEL	44	C=1.00000000	-=0.00000000	MMP16-EGP_CEPH-041105	EGP_SNPS
EGP_HISP-PANEL	44	C=1.00000000	-=0.00000000	MMP16-EGP_HISP-041105	EGP_SNPS

dbSNP summary of Genotypes for ss37042921

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_YORUB-PANEL	24	24	C=0.87500000	-=0.12500000	C/C=0.75000000 -/C=0.25000000	Pr(chiSq=0.057,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss37042921

There is no individual genotype data for ss37042921.

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