Submitted SNP(ss) Details: ss37042934

Submitted SNP(ss) Details: ss37042934

Submitter
Handle	EGP_SNPS
Submitter SNP ID	MMP16-017189
RefSNP(rs#)	rs28907888
Submitted Batch ID	MMP16-EGP_YORUB-041105
Submitted Date	Apr 12, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	Apr 12 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ003082
Submitted Gene Name	MMP16
Submitted Gene ID	4325
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	20
Population	EGP_YORUB-PANEL

Allele
Observed Allele	C/T
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GTTTTCTGCC CCTTACTCTC TACTTCTAAT CAATTGCCTC ATTTCCTCTA ATGTATATCT
 TAAGTCTTTT TATTTCTGAT GTCTATTTTG GGTTGCAACC CTATTTTAAA TCTTCGTTAT
 CTCTGGTCTT GACATGTTAT ATTATTTATA ACATGGCATG CAAGACCTCT CATTATCAGC
 CTCACCCCTT TCTCTAGCCC TGTAGCTCAG AGTTCATCTT CTGCTCACTG TGATCTAGTA
 CAGTGGTTCT CACAT
 Y
 AAAGATGGCT GTCCACTCCT AAACATTAAT GAAAACCCAG AATCTTCTAT TATGGTTTAT
 ATCCATCTAT ATTTATGGTA TTAGATAAAT CTAAGAGAAT TTTTAAATAC TTATTTAGAA
 ATTCATTAAA AATGACATGT CATAAATAAC ATTTTTATGA AAAAATAATT TTACAAAACA
 AAATAGTAAG AAAGGTGGCA TTGTTTTAGA TCTTTCCAGA TACTTTAAAT ATCTGGCTTA
 ACAAAAAATA GCTAG

Submitted Frequency for ss37042934

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_HISP-PANEL	40	T=1.00000000	C=0.00000000	MMP16-EGP_HISP-041105	EGP_SNPS
EGP_ASIAN-PANEL	44	T=1.00000000	C=0.00000000	MMP16-EGP_ASIAN-041105	EGP_SNPS
EGP_YORUB-PANEL	20	T=1.00000000	C=0.00000000	MMP16-EGP_YORUB-041105	EGP_SNPS
EGP_CEPH-PANEL	40	T=1.00000000	C=0.00000000	MMP16-EGP_CEPH-041105	EGP_SNPS
EGP_AD-PANEL	26	T=0.96153802	C=0.03846200	MMP16-EGP_AD-041105	EGP_SNPS

dbSNP summary of Genotypes for ss37042934

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
EGP_AD-PANEL	26	26	T=0.96153843	C=0.03846154	T/T=0.92307693 C/T=0.07692308	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss37042934

There is no individual genotype data for ss37042934.

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