Submitted SNP(ss) Details: ss38337550

Submitted SNP(ss) Details: ss38337550

Submitter
Handle	EGP_SNPS
Submitter SNP ID	GAB1-000675
RefSNP(rs#)	rs28989191
Submitted Batch ID	GAB1-EGP_YORUB-050505
Submitted Date	May 05, 2005
Publication Cited	[1] NIEHS Envirommental Genome Project (EGP) - (N01 ES-15478)
First entry to dbSNP	May 5 2005 12:00:00:000AM

Resource Links
GenBank Accession	DQ021880
Submitted Gene Name	GAB1
Submitted Gene ID	2549
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	GENOMIC
Method	METHOD-E
Ascertainment Samplesize	22
Population	EGP_YORUB-PANEL

Allele
Observed Allele	A/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable
Homozygote Detected	Y

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GTGTGTGTGT GTGTGTGTGT GTGTGAGCAG CGCTGTGTCT GTTTCGGAAA GCGCTCTGGG
 GAGGTCTTGT CCCTAGGGGG CGGAGCGCAA AGGACAGAAG CTCCGGCACC GAGTCGGGGC
 AGAGTCCCGC TGAGTCCGAG CGCTGCTGAG GCAGCTGGCG AGACGGCACG TCTGGAGGCG
 AGGCGGGCGC ACTGAAAGGA GGCCGGCGCG CCCGCGGCCC CGGCTCGCGT TCTGTTCAGG
 TTCGTGGGCC TGCAG
 R
 GGAGAGACTC GAACTCGTGG AACCCGCGCA CCGTGGAGTC TGTCCGCCCA GTCCGTCCGG
 GGTGCGCGAC CAGGAGAGCT AGGTTCTCGC CACTGCGCGC TCGGCAGGCG TCGGCTGTGT
 CGGGAGCGCG CCCGCCGCCC CTCAGCTGCC CGGCCCGGAG CCCGAGACGC GCGCACCATG
 AGCGGTGGTG AAGTGGTCTG CTCCGGATGG CTCCGCAAGT CCCCCCCGGA GAAAAAGTTG
 AAGCGTTATG TAAGT

Submitted Frequency for ss38337550

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Submission Batch	Submitter
EGP_CEPH-PANEL	42	A=1.00000000	G=0.00000000	GAB1-EGP_CEPH-050505	EGP_SNPS
EGP_HISP-PANEL	44	A=1.00000000	G=0.00000000	GAB1-EGP_HISP-050505	EGP_SNPS
EGP_YORUB-PANEL	22	A=0.95454502	G=0.04545500	GAB1-EGP_YORUB-050505	EGP_SNPS
EGP_ASIAN-PANEL	46	A=1.00000000	G=0.00000000	GAB1-EGP_ASIAN-050505	EGP_SNPS
EGP_AD-PANEL	12	A=1.00000000	G=0.00000000	GAB1-EGP_AD-050505	EGP_SNPS

dbSNP summary of Genotypes for ss38337550

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
HapMap-YRI	226	226	A=0.98230088	G=0.01769911	A/A=0.96460176 A/G=0.03539823	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
EGP_YORUB-PANEL	22	22	A=0.95454544	G=0.04545455	A/A=0.90909094 A/G=0.09090909	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	98	A=0.98979592	G=0.01020408	A/A=0.97959185 A/G=0.02040816	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss38337550

There is no individual genotype data for ss38337550.

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