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Submitted SNP(ss) Details: ss4388489           
Submitter
HandleEGP_SNPS
Submitter SNP IDCDKN1A-004419
RefSNP(rs#)rs3176341
Submitted Batch IDCDKN1A-PDR90-040502
Submitted DateApr 11, 2002
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPApr 11 2002 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize178
PopulationPDR90
Allele
Observed AlleleG/-
Ancestral Allele
Allele OriginN/A
SNP ClassDIV
CpG Codec_g/!a
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss4388489|allelePos=256|len=511|taxid=9606|alleles='G/-'|mol=Genomic
 tcagcctccc aagtaaccgg gaccacaggc gtgatccccc cgcccccatg cccagatttt
 tttttttttt tttttttttt tgagatgcgg tctcgctctg tcacccaggc tggagtgcag
 tggcgtgatc tcggctcact gcaagctccg cctcccgggt tcacgccatt ctcctgcctc
 agcctcccga gtagctggga ctacaggtgc tgccatcatg cccggctaat ttttttttgt
 atttttagta gagac
 N
 ggggtttcac cgtgttagcc aggatggtct caatctcctg acctcgtgct ccgccctcct
 cggcctccca aagtgctggg attacaggtg tgagacactg cacccaacca cccagctaat
 ttttatttat ttttattttt agtagagaca gggtctcagc tagttgccca ggctagtctt
 ggacccttgg gctcaaatga ttctcccacc tctgcctccc agagtattag gattacaggc
 ataagccact gcccc

  Submitted Frequency for ss4388489 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90178-=0.98314601
G=0.01685400
0.033 +/-0.026CDKN1A-PDR90-040502EGP_SNPS


  dbSNP summary of Genotypes for ss4388489 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90178178-=0.98314607
G=0.01685393-/-=0.97752810
G/G=0.01123596
-/G=0.01123596
Pr(chiSq=38.880,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss4388489 back to top
There is no individual genotype data for ss4388489.

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