NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss118386122           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000010190_NCBI36.1_chr14_25549313
RefSNP(rs#)rs1738879
Submitted Batch IDILLUMINA_WTSI:NA18507_c14
Submitted DateJan 21, 2009
Publication Cited18987734
First entry to dbSNPJan 21 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss118386122|allelePos=251|len=501|taxid=9606|alleles='T/C'|mol=Genomic
 GGTGCTTATG TGGCCTCACC CCCAACCCCA GGCAGGGCAG CTCACAACAC CAGGAGAAAT
 TCCTTTTGCT TTTGGAAAGG AGAGAGAAGA GTAAAGGACT TTATATTGCA AATTGGTTAC
 TAGTTTAGCC ACAGTAAAAT AAAACACCAA GTAGAGTCCT AAAGTCCCCA TTCCAGGATC
 TAGCTCATGG ATGACATTTC TAGACTCATC CTGGCCCTGA AAAGAACCCA CTGTCCTGAA
 GGGAAGGGCC
 Y
 AGTGATGGCA GGATTTGTTA CCTGCTGACT AAAGAGTCCT TGGGCTTTGA ATAAACATCA
 GTGGTAACTA CGCAATAGTT ACCACAGTCC TTGGATGACA CCCAGTATTA TGCTGGCTTC
 AGATATAACC CAACACAGTT CCATTGGTAG TAGCCATACA CGTGCTTGAA TCACCCCTGC
 CCCCAAATCC AGGCAGTTCA GCATGGAAAG AGAGACTCTG TATGTTTAAG GGAAAAGTAA
 AAGAAGAGAA

  Submitted Frequency for ss118386122 back to top
There is no frequency submission for ss118386122.


  dbSNP summary of Genotypes for ss118386122 back to top
No sufficient data to compute Hardy-weinberg probability for ss118386122.


  Submitted individual genotype for ss118386122 back to top
There is no individual genotype data for ss118386122.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement