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Submitted SNP(ss) Details: ss16358424           
Submitter
HandleEGP_SNPS
Submitter SNP IDPTCH2-003838
RefSNP(rs#)rs11573546
Submitted Batch IDPTCH2-PDR90-012104
Submitted DateJan 23, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJan 23 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed Allele-/CACATA
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassDIV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16358424|allelePos=256|len=511|taxid=9606|alleles='-/CACATA'|mol=Genomic
 GAACCCAGGT TGGAGTCTCA CACCCTCGAG TTATTTCAAA TACTGGCAAG TCCTAGGATC
 CACAGCAGAT GTTTCTCAGA GCTTGCCTGC CTGTTGAGCT CCCACACGCC ATCCCCACCC
 TACCTACCCC CAGCCCTGCA GACTCTCACA TCCATATACA CTCTAGGCCA GCCCTGGGGT
 CCAGAGCAGA TGTCTCGCTC TGCCTGCCTG CCCCCAGCCC CAGGACACAG ATGTGCATAC
 ACGCACATAC ACATA
 N
 TCCCCACCCA CACCACTGCT GCCTGGGTGG TCCCAGATGA CTCTTGGATT TCCTGCCCCA
 ACAGAGGCAG TCTCCCTTCC CTTCCTCCCT CTCCATTCCC CACATTCTCC CCATCTAAAC
 ACTGCTTGAG CCTCCATGTT TCCTCATCCT CTCTCCTATA CTCCAGCATA GGATAGGCTA
 GACCCCAGCA GTTTTTTGCT GTTGTTTGGG GGAGGGTTTT ATAAGAGGAT GGTAGCCAAT
 TCCTAGGCTT TTTTC

  Submitted Frequency for ss16358424 back to top

Population ID
 -Class		Sample
(2n)		Major
Allele
Freq.		Minor
Allele
Freq.		Estimated
Heterozygosity
+/-std.err.		Genotype
Freq.		Submitted
Hetero-
zygosity		Submission
Batch		Submitter
PDR90176-=0.99431801
CACATA=0.00568200
0.011 +/-0.016PTCH2-PDR90-012104EGP_SNPS


  dbSNP summary of Genotypes for ss16358424 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
PDR90176176-=0.99431819
CACATA=0.00568182-/-=0.98863637
-/CACATA=0.01136364
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss16358424 back to top
There is no individual genotype data for ss16358424.

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