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Submitted SNP(ss) Details: ss28446747           
Submitter
HandleEGP_SNPS
Submitter SNP IDMMP20-001591
RefSNP(rs#)rs2245897
Submitted Batch IDMMP20-PDR90-070204
Submitted DateJul 02, 2004
Publication Cited[1] NIEHS-SNPs, Environmental Genome Project, NIEHS ES15478.
First entry to dbSNPJul 2 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
GENOMIC
MethodMETHOD-E
Ascertainment Samplesize176
PopulationPDR90
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss28446747|allelePos=256|len=511|taxid=9606|alleles='A/G'|mol=Genomic
 GGGAGTTCTG GCTATTGTTT TGGTTAACGA AGACGTAACT CTTGCCTTAA TTCATCCAAA
 AGCTTTCTAA CAGTTACCAG TTCACTTTCC ACCCTAAGTC AGCACAGTAT AATGTAATCT
 TGCCTTGATG ATTCAGGATC TTATGTGTCT CAGAGCCGTC ATTATGAACA GCAGTTGCTA
 CTAAGAAATT TTGAAGTGAA TGCAGGAGAT ACAGGCGATT GGGTTGAATG CATGGGGAGT
 TTGGGATTAC TTGGA
 R
 GACAAATTCA ATTATACTGT AATCATCTAA CTTTTCTGTA ATCAGAATGG AAAAAGGCCC
 CCAAATGAAG ACTAATCAAA TGTTTCAGTT GAGTTGGGTT CAAATCAATC AAGTTTACTT
 CAATTTTTGT AACTAGCTGA CCAACTTCAT TAAAAGTGAC TGTTTTTCTC CTTTTGCCAC
 TTGGTAAATA ACAAAAAAAA TATGAAGCTT TCCCTGATTC CTGTGTACAG TTGTGTTACC
 CCATCATCAG GGAGA

  Submitted Frequency for ss28446747 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
PDR90176A=0.78409100
G=0.21590900
0.339 +/-0.050MMP20-PDR90-070204EGP_SNPS


  dbSNP summary of Genotypes for ss28446747 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
PDR90176176A=0.78409094
G=0.21590909A/A=0.59090906
A/G=0.38636363
G/G=0.02272727
Pr(chiSq=1.752,df=1)
=0.200
Genotype
Freq.

  Submitted individual genotype for ss28446747 back to top
There is no individual genotype data for ss28446747.

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