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Submitted SNP(ss) Details: ss44818903           
Submitter
HandleABI
Submitter SNP IDhCV2548705
RefSNP(rs#)rs121
Submitted Batch IDxplore_hum_chr7_1
Submitted DateJul 19, 2005
Publication CitedN.D.
First entry to dbSNPJul 19 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss44818903|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 AGCCACAGAA TTCATCACCA CTAGCTCTCC AAAAAAGCAA CATTATCTGG TAGATTGCAA
 AAAGTGGCAT ATAACACAGC TACTTATTAA TCCATTAGGC CTGGGGGTCT GCACTCAGAC
 ACTTGGCCAT GTTTTGCTTG AGAAACAGAT TTTGCTTCCA TAGTTGGAAA CGACTTTCAT
 GAAGGCCAGA TGGCATATAA TTCCAAATAG TTTGCAATTT CCCAGTAAAA TATATAAAGA
 AATTATGTCC TGAATTAACG TTAGAAATTT TTTAAGTGGG ATATCTATTT CTGGTCTTTA
 R
 TAAAATAAAA TTATTCAAAT CCAAGTTATG CATCTTTTTA CAAATGGTAC CCTCTGAAAC
 ACCCTGATTT CAAAAATGTT ACATGGTCAA AAGCAGGGCT TTGGTTATTT GGCTTTAAGC
 ACCACAGACC AGAGATTCAG CATCAGAAGT TTCTGGAAGC AGGTTCTAAT CACAACTTCA
 GATACCGATC GGTGATCCCG GACCTCTGAA GTGCTGTCCA TGTGTCCGAA CTATCTGAAC
 TGCTGGTCTG ATCCAAAGGC ACCCATACCT GACTGTTTCT GGGAGAGGAG TACTAAGTTT

  Submitted Frequency for ss44818903 back to top
There is no frequency submission for ss44818903.


  dbSNP summary of Genotypes for ss44818903 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.50000000A/G=0.57522124
A/A=0.21238938
G/G=0.21238938
Pr(chiSq=2.558,df=1)
=0.150
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.79069769
A=0.20930232G/G=0.62790698
A/G=0.32558140
A/A=0.04651163
Pr(chiSq=0.011,df=1)
=1.000
Genotype
Freq.
HapMap-JPT172172G=0.87790698
A=0.12209302G/G=0.79069769
A/G=0.17441860
A/A=0.03488372
Pr(chiSq=2.987,df=1)
=0.100
Genotype
Freq.
HapMap-YRI226226G=0.80973452
A=0.19026549G/G=0.67256635
A/G=0.27433628
A/A=0.05309734
Pr(chiSq=1.359,df=1)
=0.251
Genotype
Freq.
HAPMAP-ASW9898G=0.70408165
A=0.29591838G/G=0.48979592
A/G=0.42857143
A/A=0.08163265
Pr(chiSq=0.040,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282G=0.76829267
A=0.23170732G/G=0.53658539
A/G=0.46341464
Pr(chiSq=1.528,df=1)
=0.251
Genotype
Freq.
HAPMAP-CHD170170G=0.70588237
A=0.29411766A/G=0.51764709
G/G=0.44705883
A/A=0.03529412
Pr(chiSq=5.172,df=1)
=0.025
Genotype
Freq.
HAPMAP-GIH176176G=0.67613637
A=0.32386363A/G=0.46590909
G/G=0.44318181
A/A=0.09090909
Pr(chiSq=0.359,df=1)
=0.584
Genotype
Freq.
HAPMAP-LWK180180G=0.70555556
A=0.29444444G/G=0.50000000
A/G=0.41111112
A/A=0.08888889
Pr(chiSq=0.010,df=1)
=1.000
Genotype
Freq.
HAPMAP-MEX100100G=0.56000000
A=0.44000000A/G=0.60000002
G/G=0.25999999
A/A=0.14000000
Pr(chiSq=2.366,df=1)
=0.150
Genotype
Freq.
HAPMAP-MKK286286G=0.63636363
A=0.36363637A/G=0.43356642
G/G=0.41958043
A/A=0.14685315
Pr(chiSq=0.571,df=1)
=0.479
Genotype
Freq.
HAPMAP-TSI176176A=0.59659094
G=0.40340909A/G=0.48863637
A/A=0.35227272
G/G=0.15909091
Pr(chiSq=0.020,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss44818903 back to top
There is no individual genotype data for ss44818903.

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