Submitted SNP(ss) Details: ss5940451

Submitted SNP(ss) Details: ss5940451

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_029874.6_167868
RefSNP(rs#)	rs4433435
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_029874.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	G/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	c_g/!a

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:JDE11C08.B1POSITION:175QUALITY:51

Fasta sequence (Legend)

 ATGTCTTATG GATGATACAC TGTCGTTGGT CTAGCACTCA AGAGTAAGGC AAGCTTACTG
 TGGGGTCAGG CAGCTTCTCA CACCTCTGTG ACCACCTCCA GCCCCTACTC TCAGTGCTCC
 CTAACTCTAG AGCCCACTTT CTTCCCTTCT CTGCCCACTG AAGTCTATTC ATCCTTCAAA
 ATCTGGAGCA AATAGTAATC
 S
 TCTGTGTTGT TTTCCTACCA ACCCATTGTC AGAATTGGCA CCTCTTTCTT TGTGCTCTTA
 TTGCAATTTG TACATAAGAC ATACTTCTGT CTTAGCATCT TACACAGAAT CTTGTAATTA
 TAGATTTTCA CGTCTCACTT CCCTACCAGA CTGATTGCTG CTCTAGAGAA AGCGTCATGC
 CTTATTCTTC CTTTGCAATC

Submitted Frequency for ss5940451

There is no frequency submission for ss5940451.

dbSNP summary of Genotypes for ss5940451

No sufficient data to compute Hardy-weinberg probability for ss5940451.

Submitted individual genotype for ss5940451

There is no individual genotype data for ss5940451.

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