Submitted SNP(ss) Details: ss6173222

Submitted SNP(ss) Details: ss6173222

Submitter
Handle	SC_JCM
Submitter SNP ID	NT_030584.6_165716
RefSNP(rs#)	rs725021
Submitted Batch ID	02-JAN-2003
Submitted Date	Jan 10, 2003
Publication Cited	[1] SNPs detected by comparing TSC reads to NCBI build 30 Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNP	Jan 10 2003 12:00:00:000AM

Resource Links
GenBank Accession	NT_030584.6
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SNPS_DETECTED_BY_GENOMIC_ALIGNMENT_OF_TSC_READS
Ascertainment Samplesize	2
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status	Not Validated
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	N.D.
Genotype Summary	N.D.
Genotype Submission	N.D.
Haplotype	N.D.

Comment
SEQUENCE:S115P1404FB6.T0.SCFPOSITION:199QUALITY:46

Fasta sequence (Legend)

 GGATAGGCAG GGTCTTAGGG CCTGGGGAGA GGAGCCCAGA ATGGGGACAG TGTCTGGACT
 CTGGGGCACT GGGCCCTCTC TGCAGGGGGT CAGCGAATGA CGGAACCTTG TCTCCACCAG
 CGACGGCAGG TGTGCAGCCC AGACCGTGTC ACCCTCTACG GGCTGATGGT CAAGCCCATC
 CAGAGGTTCC CACAGTTCAT
 M
 CTCCTGCTTC AGGTACTGCT CAGGATTCCA GCAGCTTCAA CCCACAGGGT TTGCCTGTGG
 GCTGGGAGGT GCCTCCTGGG GTAGGAGGGA GGAGGTCTGG GCTCTTGTCC GTGATCCATA
 ACCCACCCAA CCTGCTGTGG GACTCTGGCC TCATCTTTCT CCACTTCTAG AGTGAAATTG
 ATTGTAACTG ACAGCTCAGT

Submitted Frequency for ss6173222

There is no frequency submission for ss6173222.

dbSNP summary of Genotypes for ss6173222

No sufficient data to compute Hardy-weinberg probability for ss6173222.

Submitted individual genotype for ss6173222

There is no individual genotype data for ss6173222.

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