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Submitted SNP(ss) Details: ss8209772           
Submitter
HandleSC_SNP
Submitter SNP IDNT_011786.11_10239220
RefSNP(rs#)rs1912512
Submitted Batch ID10-APR-2003b
Submitted DateApr 16, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPApr 16 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHRX_NA07340
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:XSNP50242-55c05.q1kposition:-137quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss8209772|allelePos=401|len=801|taxid=9606|alleles='A/G'|mol=Genomic
 ATGTTTATTA AACTTGTACA TTATACTGTG TTATAACATT ATACCATTTT CCAAATATTA
 GTAAGGTCGC TAACATTTTG GAAAAGGATT ACAAGTGACC TTTAGAGATA GAACAGGAGT
 TTTTCAGAAA GGCCTCTAAC ACCACTCCCA CATCCCCTTC GAGGACAGTT GATCTGCTTT
 TATCTCTTTT ACTTGTTCTT AGTTCCTGGC AAGATTTCAA TGGAGGAAAA GGCTTCTCTA
 TTTAAAAAAA ATAAAAATCA ATGAAAATTA ATGAATCGGA GAAATGGCCT GGCTAAAATG
 GGATGAAGTT CAGTATTAGG ATACTGAGGG ATACTAAAGT TTAGGGGAGC CACTAAATAA
 CACTCCTTCA TTTCCCTCCT CCACTTGAAA TCTATTGAGA
 R
 GTAAGACACA GAAGCCAGCC AGAGTTCCAA ATTACAGCTT TATTCCTGAT CAAAGCTGGA
 GGAAAGGATG TAGCCTACAT GTGTGTTCTG AAAAGCTTCC AAGTAGTTCA CATATTGACA
 GACCTACCCT ATGGGTCTGT TGTAGGGGTG GAACCTACCC CTTTAGCACC ACATGTCAGA
 GAACATACCA GAATATTCAA AAGAGCTTCA GCAACAGGCC TGCAGAGAGC ATGCCAGTTT
 CCTGTTTGCA AACCAACCAG TCAGATGAGA AGGTGGAAAT GTGGGTGCAG AGGGTAATAG
 AAAATATTGC TTTTAGGCTT TGCCCTTCTG AGGAGAAAAG TGCAAATTCT CTCCTTCCTG
 TGGTGATGTA AGTGGAGAAT AAATAGCTAG TGGCTAGTCA

  Submitted Frequency for ss8209772 back to top
There is no frequency submission for ss8209772.


  dbSNP summary of Genotypes for ss8209772 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226G=0.94247788
A=0.05752213G/G=0.92035401
A/G=0.04424779
A/A=0.03539823
Pr(chiSq=39.590,df=1)
=0.001
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686G=0.89534885
A=0.10465116G/G=0.86046511
A/G=0.06976745
A/A=0.06976745
Pr(chiSq=16.943,df=1)
=0.001
Genotype
Freq.
HapMap-JPT172172G=0.78488374
A=0.21511628G/G=0.70930231
A/G=0.15116279
A/A=0.13953489
Pr(chiSq=26.238,df=1)
=0.001
Genotype
Freq.
HapMap-YRI224224G=0.61607140
A=0.38392857G/G=0.50000000
A/A=0.26785713
A/G=0.23214285
Pr(chiSq=29.048,df=1)
=0.001
Genotype
Freq.
HAPMAP-ASW9898G=0.53061223
A=0.46938777G/G=0.36734694
A/G=0.32653061
A/A=0.30612245
Pr(chiSq=5.815,df=1)
=0.020
Genotype
Freq.
HAPMAP-CHB8282G=0.84146339
A=0.15853658G/G=0.80487806
A/A=0.12195122
A/G=0.07317073
Pr(chiSq=21.595,df=1)
=0.001
Genotype
Freq.
HAPMAP-CHD170170G=0.82941175
A=0.17058824G/G=0.77647060
A/A=0.11764706
A/G=0.10588235
Pr(chiSq=33.291,df=1)
=0.001
Genotype
Freq.
HAPMAP-GIH176176G=0.90340906
A=0.09659091G/G=0.86363637
A/G=0.07954545
A/A=0.05681818
Pr(chiSq=26.062,df=1)
=0.001
Genotype
Freq.
HAPMAP-LWK178178G=0.66853935
A=0.33146068G/G=0.52808988
A/G=0.28089887
A/A=0.19101124
Pr(chiSq=11.934,df=1)
=0.001
Genotype
Freq.
HAPMAP-MEX100100G=0.91000003
A=0.09000000G/G=0.88000000
A/G=0.06000000
A/A=0.06000000
Pr(chiSq=20.079,df=1)
=0.001
Genotype
Freq.
HAPMAP-MKK286286G=0.73076922
A=0.26923078G/G=0.65734267
A/A=0.19580419
A/G=0.14685315
Pr(chiSq=56.181,df=1)
=0.001
Genotype
Freq.
HAPMAP-TSI176176G=0.96022725
A=0.03977273G/G=0.94318181
A/G=0.03409091
A/A=0.02272727
Pr(chiSq=26.977,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss8209772 back to top
There is no individual genotype data for ss8209772.

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