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    ATP5ME ATP synthase membrane subunit e [ Sus scrofa (pig) ]

    Gene ID: 396950, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ATP5MEprovided by VGNC
    Official Full Name
    ATP synthase membrane subunit eprovided by VGNC
    Primary source
    VGNC:VGNC:85658
    See related
    Ensembl:ENSSSCG00000023903
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    ATP5I
    Expression
    Ubiquitous expression in heart (RPKM 1225.5), longissimus dorsi muscle (RPKM 545.0) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See ATP5ME in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (112092..113526, complement)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (150077..151476, complement)

    Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis class G Neighboring gene phosphodiesterase 6B Neighboring gene solute carrier family 49 member 3 Neighboring gene myosin light chain 5 Neighboring gene polycomb group ring finger 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Rapid communication: Chromosomal localization and partial cDNA sequence of the porcine ATP synthase, H+ transporting, mitochondrial F0 complex, subunit e (ATP5I) gene. Maak S, et al. J Anim Sci, 2001 May. PMID 11374558
    2. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
    3. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    4. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial proton-transporting ATP synthase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP synthase subunit e, mitochondrial
    Names
    ATP synthase, H+ transporting, mitochondrial F0 complex, subunit E
    ATP synthase, H+ transporting, mitochondrial Fo complex subunit E
    ATPase subunit e
    H+-transporting ATP synthase
    NP_999080.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213915.2 → NP_999080.2  ATP synthase subunit e, mitochondrial

      Status: VALIDATED

      Source sequence(s)
      AK399974, EW202199
      UniProtKB/Swiss-Prot
      A1XQR5, Q9MYT8
      Related
      ENSSSCP00000022175.3, ENSSSCT00000025595.4
      Conserved Domains (1) summary
      pfam05680
      Location:2 → 66
      ATP-synt_E; ATP synthase E chain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

      Range
      112092..113526 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9MYT8.4 GenPept UniProtKB/Swiss-Prot:Q9MYT8

    Gene LinkOut

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