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    RT1-CE13 RT1 class I, locus CE13 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 414790, updated on 3-Apr-2024

    Summary

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    Official Symbol
    RT1-CE13provided by RGD
    Official Full Name
    RT1 class I, locus CE13provided by RGD
    Primary source
    RGD:1359196
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Lung (RPKM 128.4), Spleen (RPKM 111.4) and 9 other tissues See more
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    Genomic context

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    See RT1-CE13 in Genome Data Viewer
    Location:
    20p12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (3314491..3322815, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (3314830..3318106, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 Unlocalized Scaffold NW_007906368.1 (3928..4540, complement)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120098828 Neighboring gene Cdk2ap1-ps7 pseudogene Neighboring gene RT1 class I, locus CE12 Neighboring gene RT1 class I, locus CE14 Neighboring gene uncharacterized LOC120098829 Neighboring gene Cdk2ap1-ps6 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Genetic and non-genetic factors affecting the visual outcome of ocular Behcet's disease. Kang EH, et al. Hum Immunol, 2013 Oct. PMID 23831258
    2. [Features of clinical manifestations of the globe, adnexal and orbital sarcoidosis]. Razumova IIu, et al. Vestn Oftalmol, 2013 Mar-Apr. PMID 23808178
    3. HLA class I polymorphisms in Tunisian patients with otosclerosis. Bel Hadj Ali I, et al. Ann Hum Biol, 2012 May. PMID 22471616
    4. HLA-B27-associated acute anterior uveitis in the University Referral Centre in North Thailand: clinical presentation and visual prognosis. Pathanapitoon K, et al. Br J Ophthalmol, 2006 Dec. PMID 16899524, Free PMC Article
    5. Audio-vestibular disturbances in Behcet's patients: report of 62 cases. Kulahli I, et al. Hear Res, 2005 May. PMID 15855027

    See all (41) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RT1 class I, locus CE13
    Names
    RT1 class I, CE13

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008836.2 → NP_001008836.1  RT1 class I, locus CE13 precursor

      See identical proteins and their annotated locations for NP_001008836.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      Q6MG31
      Conserved Domains (3) summary
      cd07698
      Location:207 → 299
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      pfam00129
      Location:25 → 203
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
      pfam06623
      Location:337 → 364
      MHC_I_C; MHC_I C-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      3314491..3322815 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063279406.1 → XP_063135476.1  RT1 class I, locus CE13 isoform X2

    2. XM_063279407.1 → XP_063135477.1  RT1 class I, locus CE13 isoform X3

    3. XM_063279408.1 → XP_063135478.1  RT1 class I, locus CE13 isoform X4

      UniProtKB/TrEMBL
      A0A2P1NRY3

    4. XM_063279405.1 → XP_063135475.1  RT1 class I, locus CE13 isoform X1

    RNA

    1. XR_010060748.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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