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    CATSPER4 cation channel sperm associated 4 [ Gallus gallus (chicken) ]

    Gene ID: 417033, updated on 5-Mar-2024

    Summary

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    Symbol
    CATSPER4provided by CGNC
    Full Name
    cation channel sperm associated 4provided by CGNC
    Primary source
    CGNC:6333
    See related
    Ensembl:ENSGALG00010000457
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    TPCN1
    Orthologs
    human mouse all
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    Genomic context

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    See CATSPER4 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (12595871..12651155, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (12608047..12663344, complement)

    Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene serine dehydratase like Neighboring gene phospholipase B domain containing 2 Neighboring gene solute carrier family 8 member B1 Neighboring gene RBPJ interacting and tubulin associated 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables voltage-gated channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    two pore calcium channel protein 1; two pore channel protein 1
    Names
    two pore segment channel 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      12595871..12651155 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025155738.3 → XP_025011506.1  two pore channel protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0X5C1
      Related
      ENSGALP00010000507.1, ENSGALT00010000949.1
      Conserved Domains (1) summary
      pfam00520
      Location:381 → 632
      Ion_trans; Ion transport protein

    2. XM_004934490.5 → XP_004934547.1  two pore channel protein 1 isoform X1

      UniProtKB/TrEMBL
      E1BQ97
      Related
      ENSGALP00010000508.1, ENSGALT00010000953.1
      Conserved Domains (1) summary
      pfam00520
      Location:440 → 691
      Ion_trans; Ion transport protein

    3. XM_046901423.1 → XP_046757379.1  two pore channel protein 1 isoform X2

    4. XM_015294861.4 → XP_015150347.1  two pore channel protein 1 isoform X6

      Conserved Domains (1) summary
      pfam00520
      Location:372 → 623
      Ion_trans; Ion transport protein

    5. XM_004934491.5 → XP_004934548.1  two pore channel protein 1 isoform X3

      Conserved Domains (1) summary
      pfam00520
      Location:413 → 664
      Ion_trans; Ion transport protein

    6. XM_004934492.5 → XP_004934549.1  two pore channel protein 1 isoform X4

      Conserved Domains (1) summary
      pfam00520
      Location:440 → 691
      Ion_trans; Ion transport protein

    RNA

    1. XR_001469170.4 RNA Sequence

    2. XR_003077919.3 RNA Sequence

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      12608047..12663344 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040685221.2 → XP_040541155.1  two pore channel protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V0X5C1
      Conserved Domains (1) summary
      pfam00520
      Location:381 → 632
      Ion_trans; Ion transport protein

    2. XM_040685218.2 → XP_040541152.1  two pore channel protein 1 isoform X1

      UniProtKB/TrEMBL
      E1BQ97
      Conserved Domains (1) summary
      pfam00520
      Location:440 → 691
      Ion_trans; Ion transport protein

    3. XM_046928285.1 → XP_046784241.1  two pore channel protein 1 isoform X2

    4. XM_040685222.2 → XP_040541156.1  two pore channel protein 1 isoform X6

      Conserved Domains (1) summary
      pfam00520
      Location:372 → 623
      Ion_trans; Ion transport protein

    5. XM_040685219.2 → XP_040541153.1  two pore channel protein 1 isoform X3

      Conserved Domains (1) summary
      pfam00520
      Location:413 → 664
      Ion_trans; Ion transport protein

    6. XM_040685220.2 → XP_040541154.1  two pore channel protein 1 isoform X4

      Conserved Domains (1) summary
      pfam00520
      Location:440 → 691
      Ion_trans; Ion transport protein

    RNA

    1. XR_005854503.2 RNA Sequence

    2. XR_005854504.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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