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    LOC5510508 zinc finger CCCH-type with G patch domain-containing protein [ Nematostella vectensis (starlet sea anemone) ]

    Gene ID: 5510508, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC5510508
    Gene description
    zinc finger CCCH-type with G patch domain-containing protein
    Locus tag
    NEMVEDRAFT_v1g244155
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nematostella vectensis
    Lineage
    Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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    Genomic context

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    See LOC5510508 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    101 current jaNemVect1.1 (GCF_932526225.1) 8 NC_064041.1 (14610854..14625235, complement)
    100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834303.1 (396005..410178, complement)

    Chromosome 8 - NC_064041.1Genomic Context describing neighboring genes Neighboring gene mitochondrial-processing peptidase subunit alpha Neighboring gene phosphatidylserine lipase ABHD16A Neighboring gene uncharacterized LOC116617173 Neighboring gene uncharacterized LOC125570103 Neighboring gene STING ER exit protein Neighboring gene melatonin receptor type 1B-B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger CCCH-type with G patch domain-containing protein
    Names
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference jaNemVect1.1

    Genomic

    1. NC_064041.1 Reference jaNemVect1.1

      Range
      14610854..14625235 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001630916.3 → XP_001630966.1  zinc finger CCCH-type with G patch domain-containing protein

      See identical proteins and their annotated locations for XP_001630966.1

      UniProtKB/Swiss-Prot
      A7SBN6
      Conserved Domains (3) summary
      cd04508
      Location:208 → 255
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      smart00356
      Location:163 → 187
      ZnF_C3H1; zinc finger
      pfam01585
      Location:310 → 351
      G-patch; G-patch domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A7SBN6.1 GenPept UniProtKB/Swiss-Prot:A7SBN6

    Gene LinkOut

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    Molecular Biology Databases