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    exoc6 exocyst complex component 6 [ Oreochromis niloticus (Nile tilapia) ]

    Gene ID: 100695951, updated on 8-Mar-2024

    Summary

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    Gene symbol
    exoc6
    Gene description
    exocyst complex component 6
    See related
    Ensembl:ENSONIG00000007244
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oreochromis niloticus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
    Expression
    Broad expression in testis (RPKM 1.7), brain (RPKM 1.2) and 8 other tissues See more
    Orthologs
    human zebrafish all
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    Genomic context

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    Location:
    chromosome: LG8
    Exon count:
    26
    Annotation release Status Assembly LG Location
    104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG8 NC_031973.2 (28283760..28338071, complement)
    103 previous assembly ASM185804v2 (GCF_001858045.1) LG8 NC_031973.1 (29302373..29357356, complement)

    Linkage Group LG8 - NC_031973.2Genomic Context describing neighboring genes Neighboring gene jumonji domain containing 1Cb Neighboring gene cytochrome P450 26A1 Neighboring gene zinc finger protein 862-like Neighboring gene hematopoietically expressed homeobox Neighboring gene TruB pseudouridine (psi) synthase family member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Oreochromis niloticus Transcriptome or Gene expression
    • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
    • BioProject: PRJNA78915
    • Analysis date: Fri Dec 29 00:23:36 2017

    Bibliography

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    Related articles in PubMed

    1. Transcriptome profiling and digital gene expression analysis of Nile tilapia (Oreochromis niloticus) infected by Streptococcus agalactiae. Zhang R, et al. Mol Biol Rep, 2013 Oct. PMID 24068429

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in Golgi to plasma membrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle tethering involved in exocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of exocyst IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exocyst complex component 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference O_niloticus_UMD_NMBU Primary Assembly

    Genomic

    1. NC_031973.2 Reference O_niloticus_UMD_NMBU Primary Assembly

      Range
      28283760..28338071 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005471222.4 → XP_005471279.1  exocyst complex component 6 isoform X5

      UniProtKB/TrEMBL
      A0A669CIF7
      Conserved Domains (1) summary
      pfam04091
      Location:471 → 777
      Sec15; Exocyst complex subunit Sec15-like

    2. XM_025909610.1 → XP_025765395.1  exocyst complex component 6 isoform X2

      UniProtKB/TrEMBL
      A0A669CIF7
      Conserved Domains (1) summary
      pfam04091
      Location:471 → 787
      Sec15; Exocyst complex subunit Sec15-like

    3. XM_025909611.1 → XP_025765396.1  exocyst complex component 6 isoform X3

      UniProtKB/TrEMBL
      A0A669BS59, I3JJT9
      Related
      ENSONIP00000009133.2, ENSONIT00000009138.2
      Conserved Domains (1) summary
      pfam04091
      Location:472 → 788
      Sec15; Exocyst complex subunit Sec15-like

    4. XM_005471223.4 → XP_005471280.1  exocyst complex component 6 isoform X6

      UniProtKB/TrEMBL
      A0A669BS59
      Related
      ENSONIP00000058931.1, ENSONIT00000037499.1
      Conserved Domains (1) summary
      pfam04091
      Location:472 → 778
      Sec15; Exocyst complex subunit Sec15-like

    5. XM_019362136.2 → XP_019217681.1  exocyst complex component 6 isoform X1

      UniProtKB/TrEMBL
      A0A669BS59

    6. XM_005471221.4 → XP_005471278.1  exocyst complex component 6 isoform X4

      UniProtKB/TrEMBL
      A0A669BS59
      Conserved Domains (1) summary
      pfam04091
      Location:472 → 778
      Sec15; Exocyst complex subunit Sec15-like
    Nucleotide Protein
    Heading Accession and Version

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