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    SNAPC3 small nuclear RNA activating complex polypeptide 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 611086, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SNAPC3provided by VGNC
    Official Full Name
    small nuclear RNA activating complex polypeptide 3provided by VGNC
    Primary source
    VGNC:VGNC:51762
    See related
    Ensembl:ENSCAFG00845012408
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) Unplaced Scaffold NW_024010447.1 (189174..218342, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 11 NC_006593.4 (34352686..34391463)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 11 NC_049232.1 (35761480..35800255)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 11 NC_049271.1 (35312476..35351237)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 11 NC_049752.1 (35103372..35142105)

    Chromosome 11 - NC_051815.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39B Neighboring gene small nuclear ribonucleoprotein-associated protein B'-like Neighboring gene uncharacterized LOC119874041 Neighboring gene PC4 and SFRS1 interacting protein 1 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase III type 3 promoter sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables bent DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables core promoter sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in snRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in snRNA transcription by RNA polymerase III IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of snRNA-activating protein complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    snRNA-activating protein complex subunit 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051815.1 Reference ROS_Cfam_1.0

      Range
      36607318..36629773
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038681787.1 → XP_038537715.1  

      UniProtKB/TrEMBL
      A0A8I3NL68
      Related
      ENSCAFP00845017337.1, ENSCAFT00845022052.1

    Reference ROS_Cfam_1.0

    Genomic

    1. NW_024010447.1 Reference ROS_Cfam_1.0

      Range
      189174..218342 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038451427.1 → XP_038307355.1  snRNA-activating protein complex subunit 3 isoform X1

      Conserved Domains (1) summary
      pfam12251
      Location:69 → 270
      zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049271.1 Alternate UMICH_Zoey_3.1

      Range
      35312476..35351237
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038490342.1 → XP_038346270.1  snRNA-activating protein complex subunit 3 isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049752.1 Alternate UNSW_CanFamBas_1.0

      Range
      35103372..35142105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038616300.1 → XP_038472228.1  snRNA-activating protein complex subunit 3 isoform X3

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049232.1 Alternate UU_Cfam_GSD_1.0

      Range
      35761480..35800255
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038552437.1 → XP_038408365.1  snRNA-activating protein complex subunit 3 isoform X4

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006593.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      34352686..34391463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_848720.6 → XP_853813.1  snRNA-activating protein complex subunit 3 isoform X5

      Conserved Domains (1) summary
      pfam12251
      Location:203 → 404
      zf-SNAP50_C; snRNA-activating protein of 50kDa MW C terminal
    Nucleotide Protein
    Heading Accession and Version

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