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TMPRSS13 transmembrane serine protease 13 [ Equus caballus (horse) ]

Gene ID: 100071161, updated on 8-Mar-2024

Summary

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Official Symbol
TMPRSS13provided by VGNC
Official Full Name
transmembrane serine protease 13provided by VGNC
Primary source
VGNC:VGNC:24339
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See TMPRSS13 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
103 current EquCab3.0 (GCF_002863925.1) 7 NC_009150.3 (26373721..26404182, complement)
102 previous assembly EquCab2.0 (GCF_000002305.2) 7 NC_009150.2 (25831597..25859962, complement)

Chromosome 7 - NC_009150.3Genomic Context describing neighboring genes Neighboring gene FXYD domain containing ion transport regulator 2 Neighboring gene FXYD domain containing ion transport regulator 6 Neighboring gene uncharacterized LOC111774222 Neighboring gene interleukin 10 receptor subunit alpha Neighboring gene uncharacterized LOC111774223

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protease serine 13
Names
transmembrane protease, serine 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009150.3 Reference EquCab3.0 Primary Assembly

    Range
    26373721..26404182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005611605.3 → XP_005611662.1  transmembrane protease serine 13 isoform X1

    Conserved Domains (3) summary
    smart00020
    Location:278 → 507
    Tryp_SPc; Trypsin-like serine protease
    cd00190
    Location:279 → 510
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
    pfam15494
    Location:184 → 273
    SRCR_2; Scavenger receptor cysteine-rich domain

  2. XM_001500863.4 → XP_001500913.1  transmembrane protease serine 13 isoform X2

    Conserved Domains (3) summary
    smart00020
    Location:265 → 494
    Tryp_SPc; Trypsin-like serine protease
    cd00190
    Location:266 → 497
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
    pfam15494
    Location:171 → 260
    SRCR_2; Scavenger receptor cysteine-rich domain
Nucleotide Protein
Heading Accession and Version

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