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TMPRSS13 transmembrane serine protease 13 [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100390056, updated on 3-Apr-2024

Summary

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Gene symbol
TMPRSS13
Gene description
transmembrane serine protease 13
See related
Ensembl:ENSCJAG00000013052
Gene type
protein coding
RefSeq status
MODEL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
human mouse all
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Genomic context

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See TMPRSS13 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 11 NC_071452.1 (15327934..15356623, complement)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 11 NC_048393.1 (15284500..15313190, complement)

Chromosome 11 - NC_071452.1Genomic Context describing neighboring genes Neighboring gene FXYD domain containing ion transport regulator 2 Neighboring gene FXYD domain containing ion transport regulator 6 Neighboring gene uncharacterized LOC108593733 Neighboring gene U1 spliceosomal RNA Neighboring gene interleukin 10 receptor subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly of the common marmoset transcriptome from NextGen mRNA sequences. Maudhoo MD, et al. Gigascience, 2014. PMID 25243066, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protease serine 13
Names
transmembrane protease, serine 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071452.1 Reference mCalJa1.2.pat.X

    Range
    15327934..15356623 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009006903.4 → XP_009005151.1  transmembrane protease serine 13 isoform X3

    UniProtKB/TrEMBL
    F7EF20, F7H942
    Related
    ENSCJAP00000024003.2
    Conserved Domains (3) summary
    smart00020
    Location:300 → 529
    Tryp_SPc; Trypsin-like serine protease
    cd00190
    Location:301 → 532
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
    pfam15494
    Location:206 → 295
    SRCR_2; Scavenger receptor cysteine-rich domain

  2. XM_054241637.1 → XP_054097612.1  transmembrane protease serine 13 isoform X1

  3. XM_009006902.4 → XP_009005150.1  transmembrane protease serine 13 isoform X2

    UniProtKB/TrEMBL
    F7EF20
    Related
    ENSCJAP00000023985.2
    Conserved Domains (3) summary
    smart00020
    Location:300 → 529
    Tryp_SPc; Trypsin-like serine protease
    cd00190
    Location:301 → 532
    Tryp_SPc; Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad ...
    pfam15494
    Location:206 → 295
    SRCR_2; Scavenger receptor cysteine-rich domain
Nucleotide Protein
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