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tpcn1 two pore segment channel 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497529, updated on 6-Mar-2021

Summary

Official Symbol
tpcn1provided by Xenbase
Official Full Name
two pore segment channel 1provided by Xenbase
Primary source
Xenbase:XB-GENE-984919
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
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Genomic context

See tpcn1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
28
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (145289259..145313230)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (132781971..132806377)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 54 Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene IQ motif containing D Neighboring gene mediator complex subunit 13-like Neighboring gene MGC75582, possible similarity to act2 Neighboring gene uncharacterized LOC116406820

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
two pore calcium channel protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    145289259..145313230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012969890.3XP_012825344.2  two pore calcium channel protein 1

    Conserved Domains (1) summary
    pfam00520
    Location:432683
    Ion_trans; Ion transport protein
  2. XM_012969894.3XP_012825348.2  two pore calcium channel protein 1

    Conserved Domains (1) summary
    pfam00520
    Location:432683
    Ion_trans; Ion transport protein
  3. XM_012969900.3XP_012825354.2  two pore calcium channel protein 1

    Conserved Domains (1) summary
    pfam00520
    Location:432683
    Ion_trans; Ion transport protein
  4. XM_012969901.3XP_012825355.2  two pore calcium channel protein 1

    Conserved Domains (1) summary
    pfam00520
    Location:432683
    Ion_trans; Ion transport protein
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