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tpcn1 two pore segment channel 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 100497529, updated on 8-Mar-2024

Summary

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Official Symbol
tpcn1provided by Xenbase
Official Full Name
two pore segment channel 1provided by Xenbase
Primary source
Xenbase:XB-GENE-984919
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
28
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (145289259..145313230)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (132781971..132806377)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene DEAD-box helicase 54 Neighboring gene RBPJ interacting and tubulin associated 1 Neighboring gene IQ motif containing D Neighboring gene mediator complex subunit 13-like Neighboring gene MGC75582, possible similarity to act2 Neighboring gene uncharacterized LOC116406820

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
  
enables voltage-gated channel activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in lysosomal membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
two pore calcium channel protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    145289259..145313230
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012969890.3 → XP_012825344.2  two pore calcium channel protein 1

    UniProtKB/TrEMBL
    A0A6I8QGK0, A0A8J0SMJ5
    Conserved Domains (1) summary
    pfam00520
    Location:432 → 683
    Ion_trans; Ion transport protein

  2. XM_012969894.3 → XP_012825348.2  two pore calcium channel protein 1

    UniProtKB/TrEMBL
    A0A6I8QGK0, A0A8J0SMJ5
    Conserved Domains (1) summary
    pfam00520
    Location:432 → 683
    Ion_trans; Ion transport protein

  3. XM_012969900.3 → XP_012825354.2  two pore calcium channel protein 1

    UniProtKB/TrEMBL
    A0A6I8QGK0, A0A8J0SMJ5
    Conserved Domains (1) summary
    pfam00520
    Location:432 → 683
    Ion_trans; Ion transport protein

  4. XM_012969901.3 → XP_012825355.2  two pore calcium channel protein 1

    UniProtKB/TrEMBL
    A0A6I8QGK0, A0A8J0SMJ5
    Conserved Domains (1) summary
    pfam00520
    Location:432 → 683
    Ion_trans; Ion transport protein
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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