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WRAP73 WD repeat containing, antisense to TP73 [ Sus scrofa (pig) ]

Gene ID: 100512788, updated on 8-Mar-2024

Summary

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Official Symbol
WRAP73provided by VGNC
Official Full Name
WD repeat containing, antisense to TP73provided by VGNC
Primary source
VGNC:VGNC:94980
See related
Ensembl:ENSSSCG00000003360
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 12.8), spleen (RPKM 9.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 6
Exon count:
12
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (65155201..65167091, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (59872079..59883951)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene multiple EGF like domains 6 Neighboring gene uncharacterized LOC110261083 Neighboring gene tumor protein p63 regulated 1 like Neighboring gene tumor protein p73 Neighboring gene coiled-coil domain containing 27

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in microtubule anchoring at mitotic spindle pole body IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic sister chromatid segregation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to mitotic spindle pole body IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MWP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitotic spindle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat-containing protein WRAP73

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001244721.1 → NP_001231650.1  WD repeat-containing protein WRAP73

    Status: VALIDATED

    Source sequence(s)
    AK347555
    UniProtKB/TrEMBL
    A0A287BI45, A0A4X1W8R7, A0A8D0JFI9
    Related
    ENSSSCP00000055810.1, ENSSSCT00000038793.3
    Conserved Domains (3) summary
    COG2319
    Location:14 → 438
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:14 → 47
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:14 → 269
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    65155201..65167091 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005664956.3 → XP_005665013.1  WD repeat-containing protein WRAP73 isoform X1

    UniProtKB/TrEMBL
    A0A8D0US57, A0A8D2ACI9
    Conserved Domains (3) summary
    COG2319
    Location:13 → 409
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:14 → 47
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:14 → 372
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_005664957.3 → XP_005665014.1  WD repeat-containing protein WRAP73 isoform X2

    UniProtKB/TrEMBL
    A0A480VJ65, A0A480YP45
    Conserved Domains (3) summary
    COG2319
    Location:13 → 269
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:14 → 47
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:14 → 269
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_002344400.1 RNA Sequence

  2. XR_001309222.2 RNA Sequence

  3. XR_001309223.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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