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BRCA1 BRCA1 DNA repair associated [ Trachypithecus francoisi (Francois's langur) ]

Gene ID: 117066917, updated on 30-Sep-2021

Summary

Gene symbol
BRCA1
Gene description
BRCA1 DNA repair associated
See related
EnsemblRapid:ENSTFRG00000007567
Gene type
protein coding
RefSeq status
MODEL
Organism
Trachypithecus francoisi
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Trachypithecus
Orthologs
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Genomic context

See BRCA1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
24
Annotation release Status Assembly Chr Location
100 current Tfra_2.0 (GCF_009764315.1) Unplaced Scaffold NW_022681466.1 (17117637..17218644)

NW_022681466.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene coiled-coil domain containing 200 Neighboring gene transmembrane protein 106A Neighboring gene NBR1 autophagy cargo receptor Neighboring gene Rho family GTPase 2 Neighboring gene vesicle amine transport 1

Genomic regions, transcripts, and products

Genomic Sequence:
NW_022681466 Unplaced Scaffold Reference Tfra_2.0 Primary Assembly

General protein information

Preferred Names
breast cancer type 1 susceptibility protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trachypithecus francoisi Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tfra_2.0 Primary Assembly

Genomic

  1. NW_022681466.1 Reference Tfra_2.0 Primary Assembly

    Range
    17117637..17218644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033182854.1XP_033038745.1  breast cancer type 1 susceptibility protein isoform X1

    Conserved Domains (5) summary
    TIGR00599
    Location:22151
    rad18; DNA repair protein rad18
    cd16498
    Location:1865
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17721
    Location:16531750
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:15451641
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    pfam12820
    Location:345508
    BRCT_assoc; Serine-rich domain associated with BRCT
  2. XM_033182851.1XP_033038742.1  breast cancer type 1 susceptibility protein isoform X1

    Conserved Domains (5) summary
    TIGR00599
    Location:22151
    rad18; DNA repair protein rad18
    cd16498
    Location:1865
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17721
    Location:16531750
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:15451641
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    pfam12820
    Location:345508
    BRCT_assoc; Serine-rich domain associated with BRCT
  3. XM_033182859.1XP_033038750.1  breast cancer type 1 susceptibility protein isoform X5

    Conserved Domains (5) summary
    PRK08581
    Location:188439
    PRK08581; amidase domain-containing protein
    TIGR00599
    Location:22151
    rad18; DNA repair protein rad18
    cd16498
    Location:1865
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17721
    Location:549646
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:441537
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
  4. XM_033182858.1XP_033038749.1  breast cancer type 1 susceptibility protein isoform X4

    Conserved Domains (4) summary
    TIGR00599
    Location:22151
    rad18; DNA repair protein rad18
    cd16498
    Location:1865
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17721
    Location:745842
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:637733
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
  5. XM_033182860.1XP_033038751.1  breast cancer type 1 susceptibility protein isoform X6

    Conserved Domains (4) summary
    TIGR00599
    Location:22151
    rad18; DNA repair protein rad18
    cd16498
    Location:1865
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17721
    Location:510607
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:402498
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
  6. XM_033182855.1XP_033038746.1  breast cancer type 1 susceptibility protein isoform X2

    Conserved Domains (4) summary
    cd16498
    Location:1865
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17721
    Location:16521749
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:15441640
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    pfam12820
    Location:344507
    BRCT_assoc; Serine-rich domain associated with BRCT
  7. XM_033182856.1XP_033038747.1  breast cancer type 1 susceptibility protein isoform X3

    Conserved Domains (3) summary
    cd17721
    Location:16061703
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:14981594
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    pfam12820
    Location:298461
    BRCT_assoc; Serine-rich domain associated with BRCT
  8. XM_033182852.1XP_033038743.1  breast cancer type 1 susceptibility protein isoform X1

    Related
    ENSTFRP00000008916.1, ENSTFRT00000011144.1
    Conserved Domains (5) summary
    TIGR00599
    Location:22151
    rad18; DNA repair protein rad18
    cd16498
    Location:1865
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17721
    Location:16531750
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:15451641
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    pfam12820
    Location:345508
    BRCT_assoc; Serine-rich domain associated with BRCT
  9. XM_033182853.1XP_033038744.1  breast cancer type 1 susceptibility protein isoform X1

    Conserved Domains (5) summary
    TIGR00599
    Location:22151
    rad18; DNA repair protein rad18
    cd16498
    Location:1865
    RING-HC_BRCA1; RING finger, HC subclass, found in breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17721
    Location:16531750
    BRCT_BRCA1_rpt2; second (C-terminal) BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    cd17735
    Location:15451641
    BRCT_BRCA1_rpt1; first BRCT domain of breast cancer type 1 susceptibility protein (BRCA1) and similar proteins
    pfam12820
    Location:345508
    BRCT_assoc; Serine-rich domain associated with BRCT