U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

exoc6 exocyst complex component 6 [ Danio rerio (zebrafish) ]

Gene ID: 406591, updated on 27-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
exoc6provided by ZNC
Official Full Name
exocyst complex component 6provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-2511
See related
Ensembl:ENSDARG00000020521 AllianceGenome:ZFIN:ZDB-GENE-040426-2511
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:77548
Summary
Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Is expressed in nervous system; optic primordium; optic vesicle; ventral mesenchyme; and ventral mesoderm. Orthologous to human EXOC6 (exocyst complex component 6). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 12
Exon count:
25
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (8968309..9087561, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (8930470..9049718, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene receptor accessory protein 3b Neighboring gene uncharacterized LOC108191699 Neighboring gene cytochrome P450, family 26, subfamily A, polypeptide 1 Neighboring gene ADAM metallopeptidase domain 8b Neighboring gene orexin receptor type 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genes and signaling networks regulated during zebrafish optic vesicle morphogenesis. Yin J, et al. BMC Genomics, 2014 Sep 30. PMID 25266257, Free PMC Article
  2. Whole Genome Sequencing-Based Mapping and Candidate Identification of Mutations from Fixed Zebrafish Tissue. Sanchez NE, et al. G3 (Bethesda), 2017 Oct 5. PMID 28855284, Free PMC Article
  3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in Golgi to plasma membrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in exocytosis IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within exocytosis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle tethering involved in exocytosis IEA
Inferred from Electronic Annotation
more info
  
involved_in vesicle tethering involved in exocytosis IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of exocyst IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

Go to the top of the page Help
Preferred Names
exocyst complex component 6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_213300.1 → NP_998465.1  exocyst complex component 6

    See identical proteins and their annotated locations for NP_998465.1

    Status: PROVISIONAL

    Source sequence(s)
    BC068986
    UniProtKB/TrEMBL
    Q6NTH9
    Related
    ENSDART00000022163.9
    Conserved Domains (2) summary
    pfam04091
    Location:464 → 706
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92 → 177
    I_LWEQ; I/LWEQ domain

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    8968309..9087561 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480047.1 → XP_021335722.1  exocyst complex component 6 isoform X5

    UniProtKB/TrEMBL
    A0A8M9PW59
    Conserved Domains (2) summary
    pfam04091
    Location:464 → 770
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92 → 177
    I_LWEQ; I/LWEQ domain

  2. XM_005156063.3 → XP_005156120.1  exocyst complex component 6 isoform X4

    UniProtKB/TrEMBL
    A0A8M2B2D9
    Conserved Domains (2) summary
    pfam04091
    Location:464 → 770
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92 → 177
    I_LWEQ; I/LWEQ domain

  3. XM_021480046.1 → XP_021335721.1  exocyst complex component 6 isoform X3

    UniProtKB/TrEMBL
    A0A8M9QIL5
    Conserved Domains (2) summary
    pfam04091
    Location:464 → 780
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92 → 177
    I_LWEQ; I/LWEQ domain

  4. XM_021480045.1 → XP_021335720.1  exocyst complex component 6 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QME7
    Conserved Domains (2) summary
    pfam04091
    Location:464 → 780
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:92 → 177
    I_LWEQ; I/LWEQ domain

  5. XM_005156065.4 → XP_005156122.1  exocyst complex component 6 isoform X6

    UniProtKB/TrEMBL
    A0A8M2B2X7
    Related
    ENSDARP00000112410.2, ENSDART00000125230.3
    Conserved Domains (2) summary
    pfam04091
    Location:462 → 768
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:90 → 175
    I_LWEQ; I/LWEQ domain

  6. XM_017358444.2 → XP_017213933.1  exocyst complex component 6 isoform X7

    UniProtKB/TrEMBL
    A0A8M6Z1A1

  7. XM_005156061.4 → XP_005156118.1  exocyst complex component 6 isoform X2

    UniProtKB/TrEMBL
    A0A8M2B218
    Conserved Domains (2) summary
    pfam04091
    Location:462 → 778
    Sec15; Exocyst complex subunit Sec15-like
    cl19756
    Location:90 → 175
    I_LWEQ; I/LWEQ domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools
Miscellaneous