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RBM28 RNA binding motif protein 28 [ Canis lupus familiaris (dog) ]

Gene ID: 475203, updated on 5-Mar-2024

Summary

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Official Symbol
RBM28provided by VGNC
Official Full Name
RNA binding motif protein 28provided by VGNC
Primary source
VGNC:VGNC:45417
See related
Ensembl:ENSCAFG00845024695
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RBM28 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
20
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (7809901..7840949)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (7729606..7760606)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (7901964..7933016)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (8014422..8045461)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (7755542..7786547)

Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene inosine monophosphate dehydrogenase 1 Neighboring gene proline rich transmembrane protein 4 Neighboring gene uncharacterized LOC106559717 Neighboring gene uncharacterized LOC111098660

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA-binding protein 28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051818.1 Reference ROS_Cfam_1.0

    Range
    7809901..7840949
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038686225.1 → XP_038542153.1  RNA-binding protein 28 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MSP0, A0A8C0QR80, A0A8I3PP77
    Related
    ENSCAFP00845034506.1, ENSCAFT00845044035.1
    Conserved Domains (4) summary
    cd12413
    Location:5 → 81
    RRM1_RBM28_like; RNA recognition motif 1 (RRM1) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12414
    Location:115 → 190
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:327 → 409
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:479 → 573
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  2. XM_038686227.1 → XP_038542155.1  RNA-binding protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MSP0
    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  3. XM_038686226.1 → XP_038542154.1  RNA-binding protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MSP0
    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049274.1 Alternate UMICH_Zoey_3.1

    Range
    8014422..8045461
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038494310.1 → XP_038350238.1  RNA-binding protein 28 isoform X1

    Conserved Domains (4) summary
    cd12413
    Location:5 → 81
    RRM1_RBM28_like; RNA recognition motif 1 (RRM1) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12414
    Location:115 → 190
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:327 → 409
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:479 → 573
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  2. XM_038494312.1 → XP_038350240.1  RNA-binding protein 28 isoform X2

    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  3. XM_038494311.1 → XP_038350239.1  RNA-binding protein 28 isoform X2

    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

    Range
    7755542..7786547
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038620536.1 → XP_038476464.1  RNA-binding protein 28 isoform X1

    Conserved Domains (4) summary
    cd12413
    Location:5 → 81
    RRM1_RBM28_like; RNA recognition motif 1 (RRM1) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12414
    Location:115 → 190
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:327 → 409
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:479 → 573
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  2. XM_038620538.1 → XP_038476466.1  RNA-binding protein 28 isoform X2

    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  3. XM_038620537.1 → XP_038476465.1  RNA-binding protein 28 isoform X2

    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

    Range
    7901964..7933016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038556607.1 → XP_038412535.1  RNA-binding protein 28 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MSP0, A0A8C0QR80, A0A8I3PP77
    Conserved Domains (4) summary
    cd12413
    Location:5 → 81
    RRM1_RBM28_like; RNA recognition motif 1 (RRM1) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12414
    Location:115 → 190
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:327 → 409
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:479 → 573
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  2. XM_038556609.1 → XP_038412537.1  RNA-binding protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MSP0
    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  3. XM_038556608.1 → XP_038412536.1  RNA-binding protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MSP0
    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    7729606..7760606
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_532435.7 → XP_532435.4  RNA-binding protein 28 isoform X1

    UniProtKB/TrEMBL
    A0A8C0MSP0, A0A8C0QR80, A0A8I3PP77
    Conserved Domains (4) summary
    cd12413
    Location:5 → 81
    RRM1_RBM28_like; RNA recognition motif 1 (RRM1) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12414
    Location:115 → 190
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:327 → 409
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:479 → 573
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  2. XM_005628423.4 → XP_005628480.2  RNA-binding protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MSP0
    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins

  3. XM_005628422.4 → XP_005628479.2  RNA-binding protein 28 isoform X2

    UniProtKB/TrEMBL
    A0A8C0MSP0
    Conserved Domains (4) summary
    COG0724
    Location:1 → 160
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12414
    Location:62 → 137
    RRM2_RBM28_like; RNA recognition motif 2 (RRM2) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12415
    Location:274 → 356
    RRM3_RBM28_like; RNA recognition motif 3 (RRM3) found in RNA-binding protein 28 (RBM28) and similar proteins
    cd12416
    Location:426 → 520
    RRM4_RBM28_like; RNA recognition motif 4 (RRM4) found in RNA-binding protein 28 (RBM28) and similar proteins
Nucleotide Protein
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