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ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase [ Canis lupus familiaris (dog) ]

Gene ID: 475938, updated on 11-Apr-2024

Summary

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Official Symbol
ALKBH3provided by VGNC
Official Full Name
alkB homolog 3, alpha-ketoglutarate dependent dioxygenaseprovided by VGNC
Primary source
VGNC:VGNC:37804
See related
Ensembl:ENSCAFG00845018740
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See ALKBH3 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
13
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 18 NC_051822.1 (26486584..26521476, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 18 NC_006600.4 (25551100..25585936, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 18 NC_049239.1 (26253706..26288540, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 18 NC_049278.1 (25996121..26030947, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 18 NC_049759.1 (25641660..25676520, complement)

Chromosome 18 - NC_051822.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(I) chain-like Neighboring gene chromosome 18 C11orf96 homolog Neighboring gene uncharacterized LOC119864202 Neighboring gene transfer RNA lysine (anticodon CUU) Neighboring gene uncharacterized LOC111090926 Neighboring gene hydroxysteroid 17-beta dehydrogenase 12 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 3; LOW QUALITY PROTEIN: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3
Names
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase
alkB, alkylation repair homolog 3
XP_005631151.1
XP_022261000.1
XP_022261001.1
XP_022261002.1
XP_038279984.1
XP_038279985.1
XP_038279986.1
XP_038279987.1
XP_038279988.1
XP_038356342.1
XP_038418904.1
XP_038418905.1
XP_038418906.1
XP_038418907.1
XP_038418908.1
XP_038483025.1
XP_038483026.1
XP_038483027.1
XP_038483028.1
XP_038483029.1
XP_533147.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051822.1 Reference ROS_Cfam_1.0

    Range
    26486584..26521476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038424059.1 → XP_038279987.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X4

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Related
    ENSCAFP00845025966.1, ENSCAFT00845033169.1
    Conserved Domains (1) summary
    cl21496
    Location:90 → 275
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_038424057.1 → XP_038279985.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 305
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_038424058.1 → XP_038279986.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 282
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  4. XM_038424056.1 → XP_038279984.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 312
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  5. XM_038424060.1 → XP_038279988.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X5

    Conserved Domains (1) summary
    cl21496
    Location:90 → 225
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

RNA

  1. XR_005296358.1 RNA Sequence

  2. XR_005296357.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049278.1 Alternate UMICH_Zoey_3.1

    Range
    25996121..26030947 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038500414.1 → XP_038356342.1  LOW QUALITY PROTEIN: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X4

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049759.1 Alternate UNSW_CanFamBas_1.0

    Range
    25641660..25676520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038627100.1 → XP_038483028.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X4

    Conserved Domains (1) summary
    cl21496
    Location:90 → 275
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_038627098.1 → XP_038483026.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

    Conserved Domains (1) summary
    cl21496
    Location:90 → 305
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_038627099.1 → XP_038483027.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X3

    Conserved Domains (1) summary
    cl21496
    Location:90 → 282
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  4. XM_038627097.1 → XP_038483025.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    Conserved Domains (1) summary
    cl21496
    Location:90 → 312
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  5. XM_038627101.1 → XP_038483029.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X5

    Conserved Domains (1) summary
    cl21496
    Location:90 → 225
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

RNA

  1. XR_005407362.1 RNA Sequence

  2. XR_005407361.1 RNA Sequence

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049239.1 Alternate UU_Cfam_GSD_1.0

    Range
    26253706..26288540 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038562979.1 → XP_038418907.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X4

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 275
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_038562977.1 → XP_038418905.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9, A0A8P0N950

  3. XM_038562978.1 → XP_038418906.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 282
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  4. XM_038562976.1 → XP_038418904.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9

  5. XM_038562980.1 → XP_038418908.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X5

    Conserved Domains (1) summary
    cl21496
    Location:90 → 225
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

RNA

  1. XR_005373298.1 RNA Sequence

  2. XR_005373297.1 RNA Sequence

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006600.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    25551100..25585936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_533147.6 → XP_533147.3  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X4

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 275
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_005631094.3 → XP_005631151.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9, A0A8P0N950
    Conserved Domains (1) summary
    cl21496
    Location:90 → 305
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_022405293.2 → XP_022261001.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X3

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 282
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  4. XM_022405292.2 → XP_022261000.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A8C0ME51, A0A8I3P7M9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 312
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  5. XM_022405294.2 → XP_022261002.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X5

    Conserved Domains (1) summary
    cl21496
    Location:90 → 225
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

RNA

  1. XR_002615826.2 RNA Sequence

  2. XR_002615825.2 RNA Sequence

Nucleotide Protein
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