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RRN3 RRN3 homolog, RNA polymerase I transcription factor [ Canis lupus familiaris (dog) ]

Gene ID: 479838, updated on 5-Mar-2024

Summary

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Gene symbol
RRN3
Gene description
RRN3 homolog, RNA polymerase I transcription factor
See related
Ensembl:ENSCAFG00845010361
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See RRN3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
18
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 6 NC_051810.1 (28641773..28670927, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 6 NC_006588.4 (29841964..29870919, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 6 NC_049227.1 (28740669..28769347, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 6 NC_049266.1 (28444804..28473963, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 6 NC_049747.1 (28334911..28364048, complement)

Chromosome 6 - NC_051810.1Genomic Context describing neighboring genes Neighboring gene pyridoxal dependent decarboxylase domain containing 1 Neighboring gene small nucleolar RNA SNORD45 Neighboring gene uncharacterized LOC111096299 Neighboring gene N-terminal asparagine amidase Neighboring gene vegetative cell wall protein gp1-like Neighboring gene phospholipase A2 group X

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase I core binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase I general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase I promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
RNA polymerase I-specific transcription initiation factor RRN3
Names
RRN3 RNA polymerase I transcription factor homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051810.1 Reference ROS_Cfam_1.0

    Range
    28641773..28670927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038669103.1 → XP_038525031.1  RNA polymerase I-specific transcription initiation factor RRN3

    UniProtKB/TrEMBL
    A0A8C0LDP3, A0A8C0Q2E7, A0A8I3NAG1
    Related
    ENSCAFP00845014242.1, ENSCAFT00845018255.1
    Conserved Domains (1) summary
    pfam05327
    Location:64 → 585
    RRN3; RNA polymerase I specific transcription initiation factor RRN3

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049266.1 Alternate UMICH_Zoey_3.1

    Range
    28444804..28473963 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038479070.1 → XP_038334998.1  RNA polymerase I-specific transcription initiation factor RRN3

    Conserved Domains (1) summary
    pfam05327
    Location:64 → 585
    RRN3; RNA polymerase I specific transcription initiation factor RRN3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049747.1 Alternate UNSW_CanFamBas_1.0

    Range
    28334911..28364048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038604399.1 → XP_038460327.1  RNA polymerase I-specific transcription initiation factor RRN3

    Conserved Domains (1) summary
    pfam05327
    Location:64 → 585
    RRN3; RNA polymerase I specific transcription initiation factor RRN3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049227.1 Alternate UU_Cfam_GSD_1.0

    Range
    28740669..28769347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038540295.1 → XP_038396223.1  RNA polymerase I-specific transcription initiation factor RRN3

    UniProtKB/TrEMBL
    A0A8C0LDP3

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006588.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    29841964..29870919 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014114608.3 → XP_013970083.1  RNA polymerase I-specific transcription initiation factor RRN3

    UniProtKB/TrEMBL
    A0A8C0LDP3, A0A8C0Q2E7, A0A8I3NAG1
    Conserved Domains (1) summary
    pfam05327
    Location:64 → 585
    RRN3; RNA polymerase I specific transcription initiation factor RRN3
Nucleotide Protein
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