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APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 [ Canis lupus familiaris (dog) ]

Gene ID: 486699, updated on 5-Mar-2024

Summary

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Official Symbol
APOBEC1provided by VGNC
Official Full Name
apolipoprotein B mRNA editing enzyme catalytic subunit 1provided by VGNC
Primary source
VGNC:VGNC:37995
See related
Ensembl:ENSCAFG00845029656
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See APOBEC1 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (37452077..37463466, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (9502214..9513600)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (8988480..8999873)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (37333157..37344537, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (37368031..37379426, complement)

Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866427 Neighboring gene microfibril associated protein 5 Neighboring gene U6 spliceosomal RNA Neighboring gene activation induced cytidine deaminase Neighboring gene developmental pluripotency associated 3 Neighboring gene growth differentiation factor 3 Neighboring gene U6 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytidine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cytidine to uridine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
C->U-editing enzyme APOBEC-1
XP_005637246.1
XP_038295009.1
XP_038295010.1
XP_038369666.1
XP_038369667.1
XP_038432641.1
XP_038432642.1
XP_038497510.1
XP_038497511.1
XP_543826.2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051831.1 Reference ROS_Cfam_1.0

    Range
    37452077..37463466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038439081.1 → XP_038295009.1  C->U-editing enzyme APOBEC-1

    UniProtKB/TrEMBL
    A0A8C0PD63, A0A8C0TDD7, A0A8I3Q1H3, A0A8I3QKC8
    Conserved Domains (2) summary
    pfam05240
    Location:108 → 186
    APOBEC_C; APOBEC-like C-terminal domain
    pfam18769
    Location:44 → 144
    APOBEC1

  2. XM_038439082.1 → XP_038295010.1  C->U-editing enzyme APOBEC-1

    UniProtKB/TrEMBL
    A0A8C0PD63, A0A8C0TDD7, A0A8I3Q1H3, A0A8I3QKC8
    Related
    ENSCAFP00845041203.1, ENSCAFT00845052513.1
    Conserved Domains (2) summary
    pfam05240
    Location:108 → 186
    APOBEC_C; APOBEC-like C-terminal domain
    pfam18769
    Location:44 → 144
    APOBEC1

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049287.1 Alternate UMICH_Zoey_3.1

    Range
    37333157..37344537 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038513738.1 → XP_038369666.1  C->U-editing enzyme APOBEC-1

    Conserved Domains (2) summary
    pfam05240
    Location:108 → 186
    APOBEC_C; APOBEC-like C-terminal domain
    pfam18769
    Location:44 → 144
    APOBEC1

  2. XM_038513739.1 → XP_038369667.1  C->U-editing enzyme APOBEC-1

    Conserved Domains (2) summary
    pfam05240
    Location:108 → 186
    APOBEC_C; APOBEC-like C-terminal domain
    pfam18769
    Location:44 → 144
    APOBEC1

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

    Range
    37368031..37379426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038641582.1 → XP_038497510.1  C->U-editing enzyme APOBEC-1

    Conserved Domains (2) summary
    pfam05240
    Location:108 → 186
    APOBEC_C; APOBEC-like C-terminal domain
    pfam18769
    Location:44 → 144
    APOBEC1

  2. XM_038641583.1 → XP_038497511.1  C->U-editing enzyme APOBEC-1

    Conserved Domains (2) summary
    pfam05240
    Location:108 → 186
    APOBEC_C; APOBEC-like C-terminal domain
    pfam18769
    Location:44 → 144
    APOBEC1

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

    Range
    8988480..8999873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038576713.1 → XP_038432641.1  C->U-editing enzyme APOBEC-1

    UniProtKB/TrEMBL
    A0A8C0PD63, A0A8C0TDD7, A0A8I3Q1H3, A0A8I3QKC8
    Conserved Domains (2) summary
    pfam05240
    Location:108 → 186
    APOBEC_C; APOBEC-like C-terminal domain
    pfam18769
    Location:44 → 144
    APOBEC1

  2. XM_038576714.1 → XP_038432642.1  C->U-editing enzyme APOBEC-1

    UniProtKB/TrEMBL
    A0A8C0PD63, A0A8C0TDD7, A0A8I3Q1H3, A0A8I3QKC8
    Conserved Domains (2) summary
    pfam05240
    Location:108 → 186
    APOBEC_C; APOBEC-like C-terminal domain
    pfam18769
    Location:44 → 144
    APOBEC1

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    9502214..9513600
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_543826.5 → XP_543826.2  C->U-editing enzyme APOBEC-1

    See identical proteins and their annotated locations for XP_543826.2

    UniProtKB/TrEMBL
    A0A8P0NFU8, A0A8P0NYA6
    Conserved Domains (3) summary
    pfam05240
    Location:125 → 177
    APOBEC_C; APOBEC-like C-terminal domain
    pfam08210
    Location:33 → 157
    APOBEC_N; APOBEC-like N-terminal domain
    cl00269
    Location:33 → 106
    cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...

  2. XM_005637189.3 → XP_005637246.1  C->U-editing enzyme APOBEC-1

    See identical proteins and their annotated locations for XP_005637246.1

    UniProtKB/TrEMBL
    A0A8P0NFU8, A0A8P0NYA6
    Conserved Domains (3) summary
    pfam05240
    Location:125 → 177
    APOBEC_C; APOBEC-like C-terminal domain
    pfam08210
    Location:33 → 157
    APOBEC_N; APOBEC-like N-terminal domain
    cl00269
    Location:33 → 106
    cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
Nucleotide Protein
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