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TTC6 tetratricopeptide repeat domain 6 [ Canis lupus familiaris (dog) ]

Gene ID: 490659, updated on 5-Mar-2024

Summary

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Gene symbol
TTC6
Gene description
tetratricopeptide repeat domain 6
See related
Ensembl:ENSCAFG00845003002
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See TTC6 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
34
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (16228390..16401165)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (15908632..16081397)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (16344675..16450102)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (15990022..16095392)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (15987232..16159825)

Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119872845 Neighboring gene uncharacterized LOC119872846 Neighboring gene forkhead box A1 Neighboring gene prefoldin subunit 1 pseudogene Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene somatostatin receptor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051812.1 Reference ROS_Cfam_1.0

    Range
    16228390..16401165
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038673480.1 → XP_038529408.1  tetratricopeptide repeat protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8I3N3Y4
    Related
    ENSCAFP00845004243.1, ENSCAFT00845005328.1
    Conserved Domains (3) summary
    TIGR02917
    Location:608 → 1469
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1396 → 1422
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1462 → 1527
    TPR_12; Tetratricopeptide repeat

  2. XM_038673481.1 → XP_038529409.1  tetratricopeptide repeat protein 6 isoform X2

    Conserved Domains (3) summary
    PLN03088
    Location:1165 → 1269
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02917
    Location:325 → 1203
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1151 → 1177
    TPR; TPR repeat [structural motif]

  3. XM_038673482.1 → XP_038529410.1  tetratricopeptide repeat protein 6 isoform X3

    Conserved Domains (3) summary
    PLN03088
    Location:1123 → 1227
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02917
    Location:283 → 1161
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1109 → 1135
    TPR; TPR repeat [structural motif]

  4. XM_038673483.1 → XP_038529411.1  tetratricopeptide repeat protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A8C0PLD8, A0A8P0SQJ4
    Related
    ENSCAFP00845004367.1, ENSCAFT00845005499.1
    Conserved Domains (4) summary
    smart00028
    Location:101 → 134
    TPR; Tetratricopeptide repeats
    TIGR02917
    Location:169 → 611
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:481 → 507
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:57 → 130
    TPR_12; Tetratricopeptide repeat

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049268.1 Alternate UMICH_Zoey_3.1

    Range
    15990022..16095392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038483100.1 → XP_038339028.1  tetratricopeptide repeat protein 6 isoform X2

    Conserved Domains (3) summary
    PLN03088
    Location:1165 → 1269
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02917
    Location:325 → 1203
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1151 → 1177
    TPR; TPR repeat [structural motif]

  2. XM_038483101.1 → XP_038339029.1  tetratricopeptide repeat protein 6 isoform X3

    Conserved Domains (3) summary
    PLN03088
    Location:1123 → 1227
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02917
    Location:283 → 1161
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1109 → 1135
    TPR; TPR repeat [structural motif]

  3. XM_038483102.1 → XP_038339030.1  tetratricopeptide repeat protein 6 isoform X4

    Conserved Domains (4) summary
    smart00028
    Location:101 → 134
    TPR; Tetratricopeptide repeats
    TIGR02917
    Location:169 → 611
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:481 → 507
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:57 → 130
    TPR_12; Tetratricopeptide repeat

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

    Range
    15987232..16159825
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038608670.1 → XP_038464598.1  tetratricopeptide repeat protein 6 isoform X1

    Conserved Domains (3) summary
    TIGR02917
    Location:608 → 1469
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1396 → 1422
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1462 → 1527
    TPR_12; Tetratricopeptide repeat

  2. XM_038608671.1 → XP_038464599.1  tetratricopeptide repeat protein 6 isoform X2

    Conserved Domains (3) summary
    PLN03088
    Location:1165 → 1269
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02917
    Location:325 → 1203
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1151 → 1177
    TPR; TPR repeat [structural motif]

  3. XM_038608672.1 → XP_038464600.1  tetratricopeptide repeat protein 6 isoform X3

    Conserved Domains (3) summary
    PLN03088
    Location:1123 → 1227
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02917
    Location:283 → 1161
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1109 → 1135
    TPR; TPR repeat [structural motif]

  4. XM_038608673.1 → XP_038464601.1  tetratricopeptide repeat protein 6 isoform X4

    Conserved Domains (4) summary
    smart00028
    Location:101 → 134
    TPR; Tetratricopeptide repeats
    TIGR02917
    Location:169 → 611
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:481 → 507
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:57 → 130
    TPR_12; Tetratricopeptide repeat

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

    Range
    16344675..16450102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038544551.1 → XP_038400479.1  tetratricopeptide repeat protein 6 isoform X2

  2. XM_038544552.1 → XP_038400480.1  tetratricopeptide repeat protein 6 isoform X3

  3. XM_038544553.1 → XP_038400481.1  tetratricopeptide repeat protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A8C0PLD8, A0A8P0SQJ4
    Conserved Domains (4) summary
    smart00028
    Location:101 → 134
    TPR; Tetratricopeptide repeats
    TIGR02917
    Location:169 → 611
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:481 → 507
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:57 → 130
    TPR_12; Tetratricopeptide repeat

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    15908632..16081397
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038585947.1 → XP_038441875.1  tetratricopeptide repeat protein 6 isoform X1

    UniProtKB/TrEMBL
    A0A8I3N3Y4
    Conserved Domains (3) summary
    TIGR02917
    Location:608 → 1469
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1396 → 1422
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1462 → 1527
    TPR_12; Tetratricopeptide repeat

  2. XM_022421946.2 → XP_022277654.1  tetratricopeptide repeat protein 6 isoform X2

    Conserved Domains (3) summary
    PLN03088
    Location:1165 → 1269
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02917
    Location:325 → 1203
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1151 → 1177
    TPR; TPR repeat [structural motif]

  3. XM_022421947.2 → XP_022277655.1  tetratricopeptide repeat protein 6 isoform X3

    Conserved Domains (3) summary
    PLN03088
    Location:1123 → 1227
    PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
    TIGR02917
    Location:283 → 1161
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:1109 → 1135
    TPR; TPR repeat [structural motif]

  4. XM_038585973.1 → XP_038441901.1  tetratricopeptide repeat protein 6 isoform X4

    UniProtKB/TrEMBL
    A0A8C0PLD8, A0A8P0SQJ4
    Conserved Domains (4) summary
    smart00028
    Location:101 → 134
    TPR; Tetratricopeptide repeats
    TIGR02917
    Location:169 → 611
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:481 → 507
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:57 → 130
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
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