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rsph14 radial spoke head 14 homolog [ Danio rerio (zebrafish) ]

Gene ID: 553388, updated on 27-Mar-2024

Summary

Official Symbol
rsph14provided by ZNC
Official Full Name
radial spoke head 14 homologprovided by ZNC
Primary source
ZFIN:ZDB-GENE-081104-375
See related
Ensembl:ENSDARG00000017983 AllianceGenome:ZFIN:ZDB-GENE-081104-375
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rtdr1; si:dkey-220o5.4
Summary
Orthologous to human RSPH14 (radial spoke head 14 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See rsph14 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (44566702..44586984, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (44572624..44593078, complement)

Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911561 Neighboring gene si:dkey-220o5.5 Neighboring gene BCL2 associated athanogene 4 Neighboring gene LSM1, U6 small nuclear RNA associated

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General protein information

Preferred Names
radial spoke head 14 homolog
Names
rhabdoid tumor deletion region gene 1
rhabdoid tumor deletion region protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327866.1NP_001314795.1  radial spoke head 14 homolog

    Status: VALIDATED

    Source sequence(s)
    CR931937
    UniProtKB/TrEMBL
    A0A8M1P3V2, B8JJ19
    Related
    ENSDARP00000023459.8, ENSDART00000026831.10
    Conserved Domains (3) summary
    cd00020
    Location:186299
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00044
    Location:151175
    HEAT; HEAT repeat [structural motif]
    cl22454
    Location:268340
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007119.7 Reference GRCz11 Primary Assembly

    Range
    44566702..44586984 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304239.3XP_009302514.1  radial spoke head 14 homolog isoform X2

    See identical proteins and their annotated locations for XP_009302514.1

    UniProtKB/TrEMBL
    A0A8M1P3V2, B8JJ19
    Conserved Domains (3) summary
    cd00020
    Location:186299
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00044
    Location:151175
    HEAT; HEAT repeat [structural motif]
    cl22454
    Location:268340
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
  2. XM_009304238.2XP_009302513.1  radial spoke head 14 homolog isoform X1

    UniProtKB/TrEMBL
    A0A8M3AVH9
    Related
    ENSDARP00000098068.3, ENSDART00000113945.4
    Conserved Domains (3) summary
    cd00020
    Location:149212
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    sd00044
    Location:2852
    HEAT; HEAT repeat [structural motif]
    cl22454
    Location:27137
    ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...