strn3 striatin, calmodulin binding protein 3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: strn3provided by ZNC
Official Full Name: striatin, calmodulin binding protein 3provided by ZNC
Primary source: ZFIN:ZDB-GENE-030616-405
See related: Ensembl:ENSDARG00000001729 AllianceGenome:ZFIN:ZDB-GENE-030616-405
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: GS2NA; id:ibd1241; wu:fc02f06; si:dz115o7.2; si:dz234g15.7; si:busm1-115o7.2
Summary: Predicted to enable armadillo repeat domain binding activity; calmodulin binding activity; and protein phosphatase 2A binding activity. Predicted to be located in membrane. Predicted to be active in dendrite. Is expressed in somite and tail bud. Orthologous to human STRN3 (striatin 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 16

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (28706870..28742980)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (28689913..28726145)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc02f06.x1 (e-PCR)
- UniSTS:192076

fc02f06.x1 (e-PCR)
- UniSTS:192077

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables armadillo repeat domain binding	IBA Inferred from Biological aspect of Ancestor more info
enables calmodulin binding	IBA Inferred from Biological aspect of Ancestor more info
enables calmodulin binding	IEA Inferred from Electronic Annotation more info
enables protein phosphatase 2A binding	IBA Inferred from Biological aspect of Ancestor more info
enables protein-containing complex binding	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in dendrite	IBA Inferred from Biological aspect of Ancestor more info
part_of protein-containing complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: striatin-3

Names: nuclear autoantigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001013266.1 → NP_001013284.1 striatin-3

See identical proteins and their annotated locations for NP_001013284.1

Status: PROVISIONAL

Source sequence(s)

BC155853

UniProtKB/TrEMBL

A9JRZ4

Related

ENSDARP00000104487.1, ENSDART00000126967.3

Conserved Domains (4) summary

COG2319
Location:369 → 698

WD40; WD40 repeat [General function prediction only]

cd00200
Location:378 → 699

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

pfam08232
Location:46 → 172

Striatin; Striatin family

sd00039
Location:388 → 434

7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007128.7 Reference GRCz11 Primary Assembly

Range

28706870..28742980

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005158784.4 → XP_005158841.1 striatin-3 isoform X1

UniProtKB/TrEMBL

A0A8M2B571

Conserved Domains (4) summary

COG2319
Location:387 → 716

WD40; WD40 repeat [General function prediction only]

cd00200
Location:396 → 717

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

pfam08232
Location:65 → 190

Striatin; Striatin family

sd00039
Location:406 → 452

7WD40; WD40 repeat [structural motif]