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marf1 meiosis regulator and mRNA stability factor 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733745, updated on 25-Apr-2024

Summary

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Official Symbol
marf1provided by Xenbase
Official Full Name
meiosis regulator and mRNA stability factor 1provided by Xenbase
Primary source
Xenbase:XB-GENE-990483
See related
Ensembl:ENSXETG00000005529
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
lkap; kiaa0430; Limkain-b1
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
27
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (34093288..34125229)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (28183788..28215611)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene myosin heavy chain 11 Neighboring gene nudE neurodevelopment protein 1 Neighboring gene bMERB domain containing 1 Neighboring gene posterior protein-like Neighboring gene pyridoxal-dependent decarboxylase domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the Western clawed frog Xenopus tropicalis. Hellsten U, et al. Science, 2010 Apr 30. PMID 20431018, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables CCR4-NOT complex binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA nuclease activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell differentiation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within oogenesis IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of gene expression IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in peroxisome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
meiosis regulator and mRNA stability factor 1
Names
Meiosis arrest female protein 1 homolog
limkain b1 (lkap)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126066.1 → NP_001119538.1  meiosis regulator and mRNA stability factor 1

    See identical proteins and their annotated locations for NP_001119538.1

    Status: PROVISIONAL

    Source sequence(s)
    BC166346
    UniProtKB/Swiss-Prot
    B2GUN4
    UniProtKB/TrEMBL
    A0A6I8QPH2
    Related
    ENSXETP00000076982.2, ENSXETT00000096746.2
    Conserved Domains (12) summary
    cd09977
    Location:864 → 925
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:992 → 1062
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:1088 → 1159
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:1164 → 1235
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:1248 → 1318
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:1324 → 1394
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:1400 → 1472
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:1475 → 1550
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    cd10910
    Location:339 → 481
    limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins
    COG0724
    Location:501 → 681
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12256
    Location:775 → 863
    RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
    pfam11608
    Location:497 → 582
    Limkain-b1; Limkain b1

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    34093288..34125229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031892721.1 → XP_031748581.1  meiosis regulator and mRNA stability factor 1 isoform X5

    UniProtKB/TrEMBL
    A0A6I8QPH2, A0A8J1IVS3
    Conserved Domains (11) summary
    cd09977
    Location:865 → 926
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:993 → 1063
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:1089 → 1160
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:1165 → 1236
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:1249 → 1319
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:1325 → 1395
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:1401 → 1463
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:502 → 682
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:340 → 462
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:498 → 583
    Limkain-b1; Limkain b1
    cd12256
    Location:776 → 864
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins

  2. XM_012970506.3 → XP_012825960.2  meiosis regulator and mRNA stability factor 1 isoform X3

    UniProtKB/TrEMBL
    A0A6I8QPH2, A0A6I8RDL4
    Related
    ENSXETP00000078998.2, ENSXETT00000078382.2
    Conserved Domains (12) summary
    cd09978
    Location:966 → 1036
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:1062 → 1133
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:1138 → 1209
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:1222 → 1292
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:1298 → 1368
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:1374 → 1446
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:1449 → 1524
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:502 → 682
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:340 → 462
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:498 → 583
    Limkain-b1; Limkain b1
    cd12256
    Location:776 → 864
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
    cl14879
    Location:869 → 899
    LabA_like_C; C-terminal domain of LabA_like proteins

  3. XM_031892720.1 → XP_031748580.1  meiosis regulator and mRNA stability factor 1 isoform X2

    UniProtKB/TrEMBL
    A0A6I8QPH2, A0A8J1IV01
    Conserved Domains (12) summary
    cd09977
    Location:864 → 925
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:992 → 1062
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:1088 → 1159
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:1164 → 1235
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:1248 → 1318
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:1324 → 1394
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:1400 → 1472
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:1475 → 1550
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:501 → 681
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:340 → 462
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:497 → 582
    Limkain-b1; Limkain b1
    cd12256
    Location:775 → 863
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins

  4. XM_012970505.3 → XP_012825959.2  meiosis regulator and mRNA stability factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A6I8QPH2, A0A6I8QUA5
    Conserved Domains (12) summary
    cd09977
    Location:865 → 926
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:993 → 1063
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:1089 → 1160
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:1165 → 1236
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:1249 → 1319
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:1325 → 1395
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:1401 → 1473
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:1476 → 1551
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:502 → 682
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:340 → 462
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:498 → 583
    Limkain-b1; Limkain b1
    cd12256
    Location:776 → 864
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins

  5. XM_012970507.3 → XP_012825961.2  meiosis regulator and mRNA stability factor 1 isoform X4

    UniProtKB/TrEMBL
    A0A6I8QPH2, A0A8J0SNL6
    Conserved Domains (12) summary
    cd09977
    Location:700 → 761
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:828 → 898
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:924 → 995
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:1000 → 1071
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:1084 → 1154
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:1160 → 1230
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:1236 → 1308
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:1311 → 1386
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:337 → 517
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:175 → 297
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:333 → 418
    Limkain-b1; Limkain b1
    cd12256
    Location:611 → 699
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B2GUN4.1 GenPept UniProtKB/Swiss-Prot:B2GUN4

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