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marf1 meiosis regulator and mRNA stability factor 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733745, updated on 30-Sep-2021

Summary

Official Symbol
marf1provided by Xenbase
Official Full Name
meiosis regulator and mRNA stability factor 1provided by Xenbase
Primary source
Xenbase:XB-GENE-990483
See related
EnsemblRapid:ENSXETG00000005529
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
lkap; kiaa0430; Limkain-b1
Orthologs
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Genomic context

See marf1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
27
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (34093288..34125229)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (28183788..28215611)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene myosin heavy chain 11 Neighboring gene nudE neurodevelopment protein 1 Neighboring gene bMERB domain containing 1 Neighboring gene posterior protein-like Neighboring gene pyridoxal-dependent decarboxylase domain containing 1

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
meiosis regulator and mRNA stability factor 1
Names
Meiosis arrest female protein 1 homolog
limkain b1 (lkap)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126066.1NP_001119538.1  meiosis regulator and mRNA stability factor 1

    See identical proteins and their annotated locations for NP_001119538.1

    Status: PROVISIONAL

    Source sequence(s)
    BC166346
    UniProtKB/Swiss-Prot
    B2GUN4
    Related
    ENSXETP00000076982.2, ENSXETT00000096746.2
    Conserved Domains (12) summary
    cd09977
    Location:864925
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:9921062
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:10881159
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:11641235
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:12481318
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:13241394
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:14001472
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:14751550
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    cd10910
    Location:339481
    limkain_b1_N_like; N-terminal LabA-like domain of limkain b1 and similar proteins
    COG0724
    Location:501681
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd12256
    Location:775863
    RRM2_LKAP; RNA recognition motif 2 in Limkain-b1 (LKAP) and similar proteins
    pfam11608
    Location:497582
    Limkain-b1; Limkain b1

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    34093288..34125229
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031892721.1XP_031748581.1  meiosis regulator and mRNA stability factor 1 isoform X5

    Conserved Domains (11) summary
    cd09977
    Location:865926
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:9931063
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:10891160
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:11651236
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:12491319
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:13251395
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:14011463
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:502682
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:340462
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:498583
    Limkain-b1; Limkain b1
    cd12256
    Location:776864
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
  2. XM_012970506.3XP_012825960.2  meiosis regulator and mRNA stability factor 1 isoform X3

    Related
    ENSXETP00000078998.2, ENSXETT00000078382.2
    Conserved Domains (12) summary
    cd09978
    Location:9661036
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:10621133
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:11381209
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:12221292
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:12981368
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:13741446
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:14491524
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:502682
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:340462
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:498583
    Limkain-b1; Limkain b1
    cd12256
    Location:776864
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
    cl14879
    Location:869899
    LabA_like_C; C-terminal domain of LabA_like proteins
  3. XM_031892720.1XP_031748580.1  meiosis regulator and mRNA stability factor 1 isoform X2

    Conserved Domains (12) summary
    cd09977
    Location:864925
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:9921062
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:10881159
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:11641235
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:12481318
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:13241394
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:14001472
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:14751550
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:501681
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:340462
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:497582
    Limkain-b1; Limkain b1
    cd12256
    Location:775863
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
  4. XM_012970505.3XP_012825959.2  meiosis regulator and mRNA stability factor 1 isoform X1

    Conserved Domains (12) summary
    cd09977
    Location:865926
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:9931063
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:10891160
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:11651236
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:12491319
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:13251395
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:14011473
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:14761551
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:502682
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:340462
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:498583
    Limkain-b1; Limkain b1
    cd12256
    Location:776864
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
  5. XM_012970507.3XP_012825961.2  meiosis regulator and mRNA stability factor 1 isoform X4

    Conserved Domains (12) summary
    cd09977
    Location:700761
    LOTUS_1_Limkain_b1; The first LOTUS domain on Limkain b1(LKAP)
    cd09978
    Location:828898
    LOTUS_2_Limkain_b1; The second LOTUS domain on Limkain b1(LKAP)
    cd09979
    Location:924995
    LOTUS_3_Limkain_b1; The third LOTUS domain on Limkain b1(LKAP)
    cd09980
    Location:10001071
    LOTUS_4_Limkain_b1; The fourth LOTUS domain on Limkain b1(LKAP)
    cd09981
    Location:10841154
    LOTUS_5_Limkain_b1; The fifth LOTUS domain on Limkain b1(LKAP)
    cd09982
    Location:11601230
    LOTUS_6_Limkain_b1; The sixth LOTUS domain on Limkain b1(LKAP)
    cd09983
    Location:12361308
    LOTUS_7_Limkain_b1; The seventh LOTUS domain on Limkain b1(LKAP)
    cd09984
    Location:13111386
    LOTUS_8_Limkain_b1; The eighth LOTUS domain on Limkain b1(LKAP)
    COG0724
    Location:337517
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cd10910
    Location:175297
    PIN_limkain_b1_N_like; N-terminal LabA-like PIN domain of limkain b1 and similar proteins
    pfam11608
    Location:333418
    Limkain-b1; Limkain b1
    cd12256
    Location:611699
    RRM2_LKAP; RNA recognition motif 2 (RRM2) found in Limkain-b1 (LKAP) and similar proteins
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