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    si:dkey-33c12.4 si:dkey-33c12.4 [ Danio rerio (zebrafish) ]

    Gene ID: 560112, updated on 27-Mar-2024

    Summary

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    Official Symbol
    si:dkey-33c12.4provided by ZNC
    Official Full Name
    si:dkey-33c12.4provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-2527
    See related
    Ensembl:ENSDARG00000057890 AllianceGenome:ZFIN:ZDB-GENE-030131-2527
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc10f01; wu:fc10f01; si:ch211-243o19.6
    Summary
    Predicted to enable RNA binding activity and metal ion binding activity. Orthologous to human TTC31 (tetratricopeptide repeat domain 31). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See si:dkey-33c12.4 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (9339921..9367676, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (9008618..9035478, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101884142 Neighboring gene butyrophilin-like protein 2 Neighboring gene ALMS1 centrosome and basal body associated protein Neighboring gene basal body orientation factor 1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    si:dkey-33c12.4; uncharacterized protein LOC560112
    Names
    tetratricopeptide repeat domain 31

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001161599.1 → NP_001155071.1  uncharacterized protein LOC560112

      Status: PREDICTED

      Source sequence(s)
      BX901922
      UniProtKB/TrEMBL
      A0A8M1NUL5, B8A599
      Related
      ENSDARP00000077797.5, ENSDART00000083362.7
      Conserved Domains (4) summary
      smart00360
      Location:502 → 567
      RRM; RNA recognition motif
      cd14270
      Location:413 → 439
      UBA; UBA domain found in proteins involved in ubiquitin-mediated proteolysis
      sd00006
      Location:331 → 361
      TPR; TPR repeat [structural motif]
      pfam13414
      Location:305 → 363
      TPR_11; TPR repeat

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      9339921..9367676 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480594.1 → XP_021336269.1  si:dkey-33c12.4 isoform X1

      UniProtKB/TrEMBL
      A0A8M9QFE8
      Conserved Domains (5) summary
      smart00360
      Location:519 → 584
      RRM; RNA recognition motif
      COG0724
      Location:471 → 614
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd14270
      Location:430 → 456
      UBA; UBA domain found in proteins involved in ubiquitin-mediated proteolysis
      sd00006
      Location:348 → 378
      TPR; TPR repeat [structural motif]
      cl26005
      Location:258 → 439
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394865.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      504650..531510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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