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    FAT4 FAT atypical cadherin 4 [ Gallus gallus (chicken) ]

    Gene ID: 395166, updated on 5-Mar-2024

    Summary

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    Official Symbol
    FAT4provided by CGNC
    Official Full Name
    FAT atypical cadherin 4provided by CGNC
    Primary source
    CGNC:8963
    See related
    Ensembl:ENSGALG00010005029
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    FatJ
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (52022199..52159072, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (52025140..52162020, complement)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107051798 Neighboring gene uncharacterized LOC121110686 Neighboring gene uncharacterized LOC112532299 Neighboring gene uncharacterized LOC124418369 Neighboring gene uncharacterized LOC121110697 Neighboring gene uncharacterized LOC121110698

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FatJ acts via the Hippo mediator Yap1 to restrict the size of neural progenitor cell pools. Van Hateren NJ, et al. Development, 2011 May. PMID 21521736, Free PMC Article
    2. Identification of a nonchordate-type classic cadherin in vertebrates: chicken Hz-cadherin is expressed in horizontal cells of the neural retina and contains a nonchordate-specific domain complex. Tanabe K, et al. Dev Dyn, 2004 Apr. PMID 15042713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protocadherin Fat 4
    Names
    FAT tumor suppressor homolog 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      52022199..52159072 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015276389.4 → XP_015131875.2  protocadherin Fat 4

      UniProtKB/TrEMBL
      A0A8V0XRC0
      Related
      ENSGALP00010006638.1, ENSGALT00010011853.1
      Conserved Domains (4) summary
      cd11304
      Location:2195 → 2290
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00282
      Location:4283 → 4411
      LamG; Laminin G domain
      cd00054
      Location:3900 → 3936
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00110
      Location:4015 → 4178
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      52025140..52162020 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040670434.2 → XP_040526368.1  protocadherin Fat 4

      UniProtKB/TrEMBL
      A0A8V0XRC0
      Conserved Domains (4) summary
      cd11304
      Location:2195 → 2290
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00282
      Location:4283 → 4411
      LamG; Laminin G domain
      cd00054
      Location:3900 → 3936
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00110
      Location:4015 → 4178
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    Nucleotide Protein
    Heading Accession and Version

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