GTF3C2 general transcription factor IIIC subunit 2 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: GTF3C2provided by VGNC
Official Full Name: general transcription factor IIIC subunit 2provided by VGNC
Primary source: VGNC:VGNC:41552
See related: Ensembl:ENSCAFG00845007231
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 17

Exon count:: 20

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	17	NC_051821.1 (21614152..21638964, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	17	NC_006599.4 (21184670..21209415, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	17	NC_049238.1 (21358573..21383332, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	17	NC_049277.1 (21300843..21325634, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	17	NC_049758.1 (21310568..21335324, complement)

Chromosome 17 - NC_051821.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D2S2572 (e-PCR)
- UniSTS:276

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in transcription by RNA polymerase III	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of transcription factor TFIIIC complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: general transcription factor 3C polypeptide 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051821.1 Reference ROS_Cfam_1.0

Range

21614152..21638964 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038691019.1 → XP_038546947.1 general transcription factor 3C polypeptide 2

UniProtKB/TrEMBL

A0A8C0LK39, A0A8C0ML05, A0A8I3N259

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038691018.1 → XP_038546946.1 general transcription factor 3C polypeptide 2

UniProtKB/TrEMBL

A0A8C0LK39, A0A8C0ML05, A0A8I3N259

Related

ENSCAFP00845009982.1, ENSCAFT00845012800.1

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UMICH_Zoey_3.1

Genomic

NC_049277.1 Alternate UMICH_Zoey_3.1

Range

21300843..21325634 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038498519.1 → XP_038354447.1 general transcription factor 3C polypeptide 2

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038498518.1 → XP_038354446.1 general transcription factor 3C polypeptide 2

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049758.1 Alternate UNSW_CanFamBas_1.0

Range

21310568..21335324 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038625120.1 → XP_038481048.1 general transcription factor 3C polypeptide 2

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038625119.1 → XP_038481047.1 general transcription factor 3C polypeptide 2

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049238.1 Alternate UU_Cfam_GSD_1.0

Range

21358573..21383332 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038561070.1 → XP_038416998.1 general transcription factor 3C polypeptide 2

UniProtKB/TrEMBL

A0A8C0LK39, A0A8C0ML05, A0A8I3N259

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_038561069.1 → XP_038416997.1 general transcription factor 3C polypeptide 2

UniProtKB/TrEMBL

A0A8C0LK39, A0A8C0ML05, A0A8I3N259

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006599.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

21184670..21209415 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038452948.1 → XP_038308876.1 general transcription factor 3C polypeptide 2

UniProtKB/TrEMBL

A0A8C0LK39, A0A8C0ML05, A0A8I3N259

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
XM_540125.7 → XP_540125.2 general transcription factor 3C polypeptide 2

See identical proteins and their annotated locations for XP_540125.2

UniProtKB/TrEMBL

A0A8C0LK39, A0A8C0ML05, A0A8I3N259

Conserved Domains (2) summary

sd00039
Location:558 → 595

7WD40; WD40 repeat [structural motif]

cl29593
Location:559 → 644

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...