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    LOC608075 tripartite motif-containing protein 43-like [ Canis lupus familiaris (dog) ]

    Gene ID: 608075, updated on 22-Jan-2024

    Summary

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    Gene symbol
    LOC608075
    Gene description
    tripartite motif-containing protein 43-like
    See related
    Ensembl:ENSCAFG00845024803
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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    Genomic context

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    See LOC608075 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (10439966..10463159)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (10194843..10224001, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (10343747..10366938)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (10242704..10257826)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (10301739..10316873)

    Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene cysteine and histidine rich domain containing 1 Neighboring gene N-acetylated alpha-linked acidic dipeptidase 2 Neighboring gene uncharacterized LOC119864954 Neighboring gene tripartite motif-containing protein 77-like Neighboring gene ragulator complex protein LAMTOR5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 43-like; tripartite motif-containing protein 77-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051825.1 Reference ROS_Cfam_1.0

      Range
      10439966..10463159
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038429803.1 → XP_038285731.1  tripartite motif-containing protein 77-like isoform X1

      UniProtKB/TrEMBL
      A0A8C0N6A7, A0A8I3S8W6
      Conserved Domains (5) summary
      TIGR02169
      Location:137 → 282
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd00162
      Location:12 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:83 → 134
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:300 → 449
      SPRY; SPRY domain
      cl17238
      Location:9 → 54
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_038429804.1 → XP_038285732.1  tripartite motif-containing protein 77-like isoform X1

      UniProtKB/TrEMBL
      A0A8C0N6A7, A0A8I3S8W6
      Related
      ENSCAFP00845034284.1, ENSCAFT00845043753.1
      Conserved Domains (5) summary
      TIGR02169
      Location:137 → 282
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd00162
      Location:12 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:83 → 134
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:300 → 449
      SPRY; SPRY domain
      cl17238
      Location:9 → 54
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049281.1 Alternate UMICH_Zoey_3.1

      Range
      10242704..10257826
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038506139.1 → XP_038362067.1  tripartite motif-containing protein 77-like isoform X1

      Conserved Domains (5) summary
      TIGR02169
      Location:137 → 282
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd00162
      Location:12 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:83 → 134
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:300 → 449
      SPRY; SPRY domain
      cl17238
      Location:9 → 54
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_038506140.1 → XP_038362068.1  tripartite motif-containing protein 77-like isoform X1

      Conserved Domains (5) summary
      TIGR02169
      Location:137 → 282
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd00162
      Location:12 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:83 → 134
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:300 → 449
      SPRY; SPRY domain
      cl17238
      Location:9 → 54
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

      Range
      10301739..10316873
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038632234.1 → XP_038488162.1  tripartite motif-containing protein 77-like isoform X1

      Conserved Domains (5) summary
      TIGR02169
      Location:137 → 282
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd00162
      Location:12 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:83 → 134
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:300 → 449
      SPRY; SPRY domain
      cl17238
      Location:9 → 54
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_038632235.1 → XP_038488163.1  tripartite motif-containing protein 77-like isoform X1

      Conserved Domains (5) summary
      TIGR02169
      Location:137 → 282
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
      cd00162
      Location:12 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:83 → 134
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:300 → 449
      SPRY; SPRY domain
      cl17238
      Location:9 → 54
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

      Range
      10343747..10366938
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038568346.1 → XP_038424274.1  tripartite motif-containing protein 77-like isoform X1

      UniProtKB/TrEMBL
      A0A8C0N6A7

    2. XM_038568347.1 → XP_038424275.1  tripartite motif-containing protein 77-like isoform X1

      UniProtKB/TrEMBL
      A0A8C0N6A7

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      10194843..10224001 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038456509.1 → XP_038312437.1  tripartite motif-containing protein 43-like isoform X3

      Conserved Domains (3) summary
      cd00162
      Location:12 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:84 → 135
      Bbox_SF; B-box-type zinc finger superfamily
      cl17238
      Location:9 → 54
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    2. XM_005633376.4 → XP_005633433.2  tripartite motif-containing protein 43-like isoform X2

      UniProtKB/TrEMBL
      A0A8C0N6A7, A0A8P0S9Y9
      Conserved Domains (4) summary
      cd00162
      Location:12 → 52
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cl00034
      Location:84 → 135
      Bbox_SF; B-box-type zinc finger superfamily
      cl02614
      Location:301 → 450
      SPRY; SPRY domain
      cl17238
      Location:9 → 54
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
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