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    ebr1 egg bindin receptor 1 [ Strongylocentrotus purpuratus (purple sea urchin) ]

    Gene ID: 577775, updated on 14-Dec-2023

    Summary

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    Gene symbol
    ebr1
    Gene description
    egg bindin receptor 1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Strongylocentrotus purpuratus
    Lineage
    Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Camarodonta; Echinidea; Strongylocentrotidae; Strongylocentrotus
    Annotation information
    Annotation category: partial on reference assembly
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    Genomic context

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    Location:
    chromosome: Un
    Exon count:
    45
    Annotation release Status Assembly Chr Location
    102 current Spur_5.0 (GCF_000002235.5) Unplaced Scaffold NW_022145610.1 (575235..631367, complement)
    Build 3.1 previous assembly Spur_3.1 (GCF_000002235.3) Unplaced Scaffold NW_003577411.1 (148277..226487, complement)

    NW_022145610.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105445348 Neighboring gene dimethylaniline monooxygenase [N-oxide-forming] 5 Neighboring gene procollagen galactosyltransferase 2 Neighboring gene uncharacterized LOC115929165

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Assortative mating drives linkage disequilibrium between sperm and egg recognition protein loci in the sea urchin Strongylocentrotus purpuratus. Stapper AP, et al. Mol Biol Evol, 2015 Apr. PMID 25618458
    2. The species-specific egg receptor for sea urchin sperm adhesion is EBR1,a novel ADAMTS protein. Kamei N, et al. Genes Dev, 2003 Oct 15. PMID 14561772, Free PMC Article
    3. De novo assembly of the transcriptome of Acanthaster planci testes. Stewart MJ, et al. Mol Ecol Resour, 2015 Jul. PMID 25494938
    4. Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis. Tu Q, et al. Genome Res, 2012 Oct. PMID 22709795, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Assortative mating drives linkage disequilibrium between sperm and egg recognition protein loci,ebr1 and BND , in the sea urchin Strongylocentrotus purpuratus.
      Title: Assortative mating drives linkage disequilibrium between sperm and egg recognition protein loci in the sea urchin Strongylocentrotus purpuratus.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    egg bindin receptor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214665.1 → NP_999830.1  egg bindin receptor 1 precursor

      See identical proteins and their annotated locations for NP_999830.1

      Status: PROVISIONAL

      Source sequence(s)
      AY341264
      UniProtKB/TrEMBL
      Q6VF97
      Conserved Domains (10) summary
      smart00042
      Location:2542 → 2647
      CUB; Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein
      smart00209
      Location:1297 → 1348
      TSP1; Thrombospondin type 1 repeats
      COG3291
      Location:2722 → 3019
      COG3291; PKD repeat [Function unknown]
      cd00041
      Location:1185 → 1287
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cd04273
      Location:217 → 411
      ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
      pfam01421
      Location:217 → 410
      Reprolysin; Reprolysin (M12B) family zinc metalloprotease
      pfam01562
      Location:65 → 169
      Pep_M12B_propep; Reprolysin family propeptide
      pfam02494
      Location:3355 → 3434
      HYR; HYR domain
      cl00049
      Location:3598 → 3700
      CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
      cl03620
      Location:3031 → 3110
      DUF5011; Domain of unknown function (DUF5011)

    RefSeqs of Annotated Genomes: Strongylocentrotus purpuratus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Spur_5.0 Primary Assembly

    Genomic

    1. NW_022145610.1 Reference Spur_5.0 Primary Assembly

      Range
      575235..631367 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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