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    LOC101027262 uncharacterized LOC101027262 [ Xenopus laevis (African clawed frog) ]

    Gene ID: 101027262, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC101027262
    Gene description
    uncharacterized LOC101027262
    Locus tag
    XELAEV_18007075mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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    Genomic context

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    Location:
    chromosome: 1L
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (151787568..152622363, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (138915389..139768327, complement)

    Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene Ig gamma-2A chain C region-like Neighboring gene oxidase (cytochrome c) assembly 1-like L homeolog Neighboring gene immunoglobulin heavy constant gamma 4-like Neighboring gene immunoglobulin heavy constant mu-like Neighboring gene Ig heavy chain V region PJ14-like Neighboring gene Ig heavy chain V region PJ14-like Neighboring gene Ig heavy chain V region PJ14-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene immunoglobulin heavy variable 2-26-like Neighboring gene immunoglobulin heavy variable 4-61-like Neighboring gene Ig heavy chain V region PJ14-like Neighboring gene Ig heavy chain V region PJ14-like Neighboring gene immunoglobulin heavy variable 4-61-like Neighboring gene immunoglobulin heavy variable 4-61-like Neighboring gene immunoglobulin heavy variable 5-51-like Neighboring gene Ig heavy chain V region 6.96-like Neighboring gene immunoglobulin heavy variable 3-11-like Neighboring gene immunoglobulin heavy variable 1-69-2-like Neighboring gene Ig heavy chain V region XIG8-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region XIG8-like Neighboring gene Ig heavy chain V region XIG8-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region 914-like Neighboring gene Ig heavy chain V region 914-like Neighboring gene immunoglobulin heavy variable 3-48-like Neighboring gene immunoglobulin heavy variable 3-7-like Neighboring gene Ig heavy chain V region 6.96-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region 914-like Neighboring gene immunoglobulin heavy variable 1-69-2-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene immunoglobulin heavy variable 3-43-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene immunoglobulin heavy variable 3-43-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene Ig heavy chain V region XIG14-like Neighboring gene immunoglobulin heavy variable 3-48-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A second Xenopus immunoglobulin heavy chain constant region isotype gene. Haire RN, et al. Nucleic Acids Res, 1989 Feb 25. PMID 16617486, Free PMC Article
    2. Eleven distinct VH gene families and additional patterns of sequence variation suggest a high degree of immunoglobulin gene complexity in a lower vertebrate, Xenopus laevis. Haire RN, et al. J Exp Med, 1990 May 1. PMID 2110243, Free PMC Article
    3. Organization and rearrangement of immunoglobulin M genes in the amphibian Xenopus. Schwager J, et al. EMBO J, 1988 Aug. PMID 2903824, Free PMC Article
    4. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized LOC101027262
    Names
    IgM VH-region (15 AA)
    IgM VH-region (29 AA)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001280604.1 → NP_001267533.1  uncharacterized LOC101027262 precursor

      See identical proteins and their annotated locations for NP_001267533.1

      Status: PROVISIONAL

      Source sequence(s)
      BC072277
      UniProtKB/TrEMBL
      Q6GPX4, Q6INK3
      Conserved Domains (6) summary
      cd00098
      Location:264 → 351
      IgC; Immunoglobulin Constant domain
      cd04981
      Location:23 → 135
      IgV_H; Immunoglobulin (Ig) heavy chain (H), variable (V) domain
      cd04985
      Location:141 → 234
      IgC_CH1; CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin
      cd05768
      Location:468 → 568
      IgC_CH4; CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin
      smart00410
      Location:26 → 134
      IG_like; Immunoglobulin like
      cl11960
      Location:363 → 457
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      151787568..152622363 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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